We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 5TT0 | 2016 | 1 |
| 2LPD | 2012 | 1 |
| 7KQA | 2020 | 1 |
| 5U8O | 2017 | 1 |
| 8DQB | 2022 | 1 |
| 6WE5 | 2020 | 1 |
| 4EGJ | 2012 | 1 |
| 6CV6 | 2018 | 1 |
| 6WGY | 2020 | 1 |
| 5VJY | 2017 | 1 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3r20 | - | http://bmcbioinformatics.biomedcentral.com/articles/10.1186/s12859-016-0898-8 | Resistance related metabolic pathways for drug target identification in Mycobacterium tuberculosis | 2016 | R Cloete, E Oppon, E Murungi - BMC , 2016 - bmcbioinformatics.biomedcentral. | ... Abbreviations used: NUI- Not under investigation, PDB- Protein Data Bank, TBSGC- TB StructuralGenome ... without 3R20 used as a template while the red model consist of 3R20 used as ... EM assistedwith modelling of the protein structure and WS visually inspected the quality of ... |
| 2 | 3s4k | - | http://onlinelibrary.wiley.com/doi/10.1002/prot.25282/full | A family 13 thioesterase isolated from an activated sludge metagenome: Insights into aromatic compounds metabolism | 2017 | A SnchezReyez, RA BatistaGarca - Proteins: Structure, , 2017 - Wiley Online Library | ... All other parameters were set as default unless otherwise noted. Structure modelling by homology. ...In our first attempt to model ThYest_ar, I-TASSER[31] selected as templates from the PDB bacterial thioesterases (validated and putative): 1VH9 and 1VH5 (putative thioesterases from E. coli), 4K4C (thioesterase from E. coli), 1Q4T (thioesterase from Arthrobacter), 1SH8 (putative thioesterase from P. aeruginosa), 1SC0 (putative thioesterase from Haemophillus influenzae), 3S4K (putative esterase from ... |
| 3 | 5dvw | - | https://core.ac.uk/download/pdf/323470394.pdf | Napovedni modeli za identifikacijo potencialnih inhibitorjev razlinih proteinov virusa ebole | 2020 | V Hudi - 2020 - core.ac.uk | Monte Carlo MLR Multivariatna linearna regresija mRNA Informacijska ribonukleinska kislina NP Nukleoprotein PCA Metoda glavnih komponent PDB Podatkovna knjinica Knowledge of the viral structure gives us insight into the functioning of the virus and allows us to predict |
| 4 | 3r0o | - | http://link.springer.com/article/10.1007/s00253-015-6551-z | Metabolism of β-valine via a CoA-dependent ammonia lyase pathway | 2015 | M Otzen, CG Crismaru, CP Postema, HJ Wijma… - Applied microbiology …, 2015 - Springer | ... to the Thermus thermophilus PaaG (35 % identity), a predicted 2, 3-dehydroadipyl-CoA hydrataseof which the structure is solved (PDB 3HRX ... searches of the protein encoded by ORF12 showedhomology to Mycobacterium avium carnitinyl-CoA hydratase (3R0O; 48 % identity ... |
| 5 | 5ez3 | - | https://f1000research.com/articles/9-1268 | Characterization of sulfated polysaccharide activity against virulent Plasmodium falciparum PHISTb/RLP1 protein | 2020 | JM Mutisya, VA Mobegi, JK Kinyua, MN Kivecu- , 2020 - f1000research.com | sequences to the reference, 12 non-synonymous single nucleotide polymorphisms were considered for mutant protein structure analysis. Eleven drug compounds with antiplasmodial activity were identified. Both modelled PHISTb/RLP1 reference and mutant structures had a |
| 6 | 6q04 | - | https://www.tandfonline.com/doi/abs/10.1080/14760584.2020.1813574 | An overview of Middle East respiratory syndrome coronavirus vaccines in preclinical studies | 2020 | N Zhang, J Shang, C Li, K Zhou, L Du- Expert Review of Vaccines, 2020 - Taylor & Francis | Structures of MERS-CoV S1-NTD and MERS-CoV S1-NTD-Neu5Ac complex are presented by ribbon model ( PDB code 6Q04 ) (A) Structure of MERS Both MERS-CoV macro domain and ADP-ribose are presented by ribbon model in green and red, separately ( PDB code 5DUS |
| 7 | 5bq2 | - | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5512856/ | Structural insight into the binding of C60-derivatives with enoyl-pyruvate transferase from Helicobacter pylori | 2017 | M Teimouri, M Junaid, A Khan, H Zhang - Bioinformation, 2017 - ncbi.nlm.nih.gov | ... BLAST, UDP-Nacetyl- glucosamine 1-carboxy-vinyl-transferase of Pseudomonas aeruginosa(PDB ID 5BQ2 ... The alignment of 5BQ2 and H. pylori Enoyl pyruvate transferase is given in Figure ...The modeled structure was superimposed on to the template, giving root mean square ... |
| 8 | 3sdo | - | http://link.springer.com/article/10.1007/s12033-015-9897-7 | Evaluation of the Conformational Stability of Recombinant Desulfurizing Enzymes from a Newly Isolated Rhodococcus sp. | 2016 | F Parravicini, S Brocca, M Lotti - Molecular biotechnology, 2016 - Springer | ... In this perspective, we built by homology a 3D model of DszA, whose crystallographic structurehas not been solved yet and ... against the Protein Data Bank (PDB) revealed that DszA sharesthe highest identity with a nitrilotriacetate monooxygenase (PDB code 3SDO.1.A ... |
| 9 | 3upt | - | http://elib.uni-stuttgart.de/handle/11682/1465 | Systematic analysis of the sequence-structure-function relationships of thiamine diphosphate-dependent enzymes | 2015 | C Vogel - 2015 - elib.uni-stuttgart.de | ... A putative acetohydroxyacid synthase (AHAS) from the yeast Torulaspora delbrueckii (TdAHAS, sid|11616) and a transketolase from Agrobacterium tumefaciens (AtTK, sid|29832), both missing experimentally determined structure information, were modeled using the structures of ScAHAS (pdb|1N0H, Pang et al. 2004) and the transketolase from Burkholderia pseudomallei (BpTK, pdb|3UPT, Baugh et al. 2013) as templates, respectively.e ... |
| 10 | 4qhq | - | http://www.degruyter.com/dg/justaccepted.articlelist.resultlinks.fullcontentlink... | The contribution of methionine to the stability of the Escherichia coli MetNIQ ABC transporter-substrate binding protein complex. | 2015 | PT Nguyen, QW Li, NS Kadaba, JY Lai, JG Yang… - Biological …, 2015 - degruyter.com | ... structures with PDB entries 3TQW, 3UP9, 4EF1, 4GOT, 4IB2, 4K3F, 4QHQ, 4QYM, and 4Q5T. ...2008) that was in turn solved by molecular replacement from PDB entry 1P99 (Williams et al.,2004), a Gly-Met-binding protein. ... Coordinates and structure factors have been ... |