We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 5TT0 | 2016 | 1 |
| 2LPD | 2012 | 1 |
| 7KQA | 2020 | 1 |
| 5U8O | 2017 | 1 |
| 8DQB | 2022 | 1 |
| 6WE5 | 2020 | 1 |
| 4EGJ | 2012 | 1 |
| 6CV6 | 2018 | 1 |
| 6WGY | 2020 | 1 |
| 5VJY | 2017 | 1 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 4gl8 | - | http://mbio.asm.org/content/8/6/e02047-17.short | Peptide Uptake Is Essential for Borrelia burgdorferi Viability and Involves Structural and Regulatory Complexity of its Oligopeptide Transporter | 2017 | AM Groshong, A Dey, I Bezsonova, MJ Caimano- mBio, 2017 - Am Soc Microbiol | Structural features distinguish BbOppA4 from Gram-negative and Gram-positive OBPs.We took advantage of the crystal structure of BbOppA4 ( PDB ID: 4GL8 ) (39) to determine if B. burgdorferi OBPs possess structural elements compatible with promiscuous peptide binding, the |
| 2 | 3md7 | - | http://pubs.acs.org/doi/abs/10.1021/bi500406h | Dual specificity and novel structural folding of yeast phosphodiesterase-1 for hydrolysis of second messengers cAMP and cGMP | 2014 | Y Tian, W Cui, M Huang, H Robinson, Y Wan - Biochemistry, 2014 - ACS Publications | ... structure. The atomic model was built with O(39) and refined with REFMAC.(40). The yPDE1 structure was compared with structures in the Protein Data Bank by the online program Dali (http://www.ebi.ac.uk/Tools/structure/dalilite). ... |
| 3 | 3u0g | - | http://www.sciencedirect.com/science/article/pii/S0141022916301995 | A Novel highly thermostable branched-chain amino acid aminotransferase from the crenarchaeon Vulcanisaeta moutnovskia | 2017 | TN Stekhanova, AL Rakitin, AV Mardanov - Enzyme and Microbial , 2017 - Elsevier | ... The first X-ray diffraction structure of BCATs, namely, the structure of BCAT ... The search for close homologues of VMUT0738 using BLAST showed the highest levels of identity with hypothetical BCATs from other members of the genera Vulcanisaeta … The homologues with known structures were TUZN1299 from T. uzoniensis (PDB ID 5CE8, 54% identity, query cover 94%), putative BCAT from Burkholderia pseudomallei (PDB ID 3U0G, 47% identity, query cover 94% ... |
| 4 | 3gvf | - | http://cdn.intechopen.com/pdfs-wm/46885.pdf | From Tilings to FibersBio-mathematical Aspects of Fold Plasticity | 2014 | C Lesieur, L Vuillon - 2014 - cdn.intechopen.com | ... According to the PDB (Protein Data Bank [30] ) where all available atomic structures of proteins are stored ... x-ray structure of the cholera toxin B pentamer (CtxB5) is shown (PDB code 3CHB). ... Example with the protein 3GVF (PDB code), a D3 symmetry oligomer made of 6 chains ... |
| 5 | 6x79 | - | https://www.biorxiv.org/content/10.1101/2021.05.06.441046v1.abstract | Structure-based design of a highly stable, covalently-linked SARS-CoV-2 spike trimer with improved structural properties and immunogenicity | 2021 | E Olmedillas, CJ Mann, W Peng, YT Wang, RD Avalos- bioRxiv, 2021 - biorxiv.org | For VFLIP_D614G, a population of 213,852 particles yielded a 2.8 resolution structure (Figure S2). Importantly, the density maps confirm Further sub-classification revealed an overall architecture that is similar to other closed spikes in the Protein Data Bank ( PDB ). ... A previously published structure of the SARS-CoV-2 ectodomain with all RBDs in the down conformation (PDB ID 6X79) was used to fit the cryo-EM maps in UCSF ChimeraX |
| 6 | 3oj7 | - | http://scripts.iucr.org/cgi-bin/paper?rl5035 | Expression, purification, crystallization and preliminary X-ray crystallographic analysis of human histidine triad nucleotide-binding protein 2 (hHINT2) | 2013 | R Dolot, A Wlodarczyk, GD Bujacz? - Acta Crystallographica Section F Structural Biology and Crystallization Communications, 2013 - scripts.iucr.org | ... above 15% similarity to a given hHINT2 sequence and BALBES, and five of them were used for further calculations: PDB entries 1kpf ... 404, 627-638.] ), 3oj7 (HIT family protein from Entamoeba histolytica; 40.2% similarity; Seattle Structural Genomics Center for Infectious Disease ... |
| 7 | 3r4t | - | http://search.proquest.com/openview/efe1b9c57e1812b2a0458378ec81b092/1?pq-origsi... | Modeling and Docking Study of GABA-AT Protein in Mycobacterium Tuberculosis-A Computational Approach | 2018 | R Sriroopreddy, P Raghuraman- Research Journal of, 2018 - search.proquest.com | The best similarity match with the template identity of 83% ( PDB ID: 3R4T ) The secondary structure prediction was done using YASPIN server (http://zeus.few.vu.nl/).8 The result of the secondary structure prediction provides a brief idea about the folding pattern of the |
| 8 | 3gaf | - | http://www.ingentaconnect.com/content/ben/ppl/2014/00000021/00000009/art00004 | Carboxyl-Terminal and Arg38 are Essential for Activity of the 7α-Hydroxysteroid Dehydrogenase from Clostridium absonum | 2014 | D Lou, B Wang, J Tan, L Zhu - Protein and peptide letters, 2014 - ingentaconnect.com | ... E. coli (Ec 7α-HSDH, PDB code: 1FMC) [21] and Brucella melitensis (PDB code: 3GAF) havebeen ... and arginine at position 37 of the human estro- genic 17β-HSDH (PDB code: 1QYV ... 38 isof vital importance, and the residue- replacement disrupts the normal structure for cofactor ... |
| 9 | 3meq | - | http://scripts.iucr.org/cgi-bin/paper?tt5041 | Structure of Escherichia coli AdhP (ethanol-inducible dehydrogenase) with bound NAD | 2013 | LM Thomas, AR Harper, WA Miner? - Acta Crystallographica Section F Structural Biology and Crystallization Communications, 2013 - scripts.iucr.org | ... 2007). J. Appl. Cryst. 40, 658-674.] ). The structure of Brucella melitensis alcohol dehydrogenase (PDB entry 3meq ; Seattle Structural Genomics Center for Infectious Disease, unpublished work) was used as the initial model. The ... |
| 10 | 4hwg | 5dld | http://www.jbc.org/content/293/26/10119.short | The tetrameric structure of sialic acidsynthesizing UDP-GlcNAc 2-epimerase from Acinetobacter baumannii: A comparative study with human GNE | 2018 | TP Ko, SJ Lai, TJ Hsieh, CS Yang, Y Chen- Journal of Biological Chemistry, 2018 - ASBMB | known for at least 10 species ( PDB codes 1F6D, 1O6C, 1V4V, 3BEO, 3DZC, 3OT5, 4HWG , 4NEQ, 5DLD Structural determination and refinement molecular replacement with the PHENIX AutoMR (24) using the previously published human homologue structure ( PDB code 4ZHT |