We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 8FT7 | 2023 | 1 |
| 4OTL | 2014 | 1 |
| 5IZT | 2016 | 1 |
| 3SVT | 2011 | 1 |
| 6N1C | 2018 | 1 |
| 7SYC | 2021 | 1 |
| 6D9N | 2018 | 1 |
| 4IV6 | 2013 | 1 |
| 5VRB | 2017 | 1 |
| 4HVJ | 2012 | 1 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3grp | 3f9i | http://dx.plos.org/10.1371/journal.pone.0105751 | BdcA, a Protein Important for Escherichia coli Biofilm Dispersal, Is a Short-Chain Dehydrogenase/Reductase that Binds Specifically to NADPH | 2014 | DM Lord, AU Baran, TK Wood, W Peti, R Page - PloS one, 2014 - dx.plos.org | ... Table 2. BdcA structural homologs as determined by DALI and FFAS. ... Indeed, the same loopsare disordered in the protein whose structure is most similar to BdcA, Bartonella henselae FabG(PDB 3GRP; Table 2) and Rickettsia prowazekii FabG (PDB 3F9I; Table 2) [14]. ... |
| 2 | 3gvh | - | https://mic.microbiologyresearch.org/content/journal/micro/10.1099/mic.0.000600 | Analysis of the Mycoplasma bovis lactate dehydrogenase reveals typical enzymatic activity despite the presence of an atypical catalytic site motif | 2018 | Y Masukagami, KA Tivendale- , 2018 - mic.microbiologyresearch.org | between MBOVPG45_0326 and the other bac- terial LDHs, and 2230 % identity across the region of align- ment between MBOVPG45_0326 and the other bacterial and parasitic MDHs in the PDB protein structure database 3GVH RCSB PDB Brucella melitensis LDH |
| 3 | 3nf4 | - | https://www.mdpi.com/2073-4352/9/11/548 | Crystal Structures of Putative Flavin Dependent Monooxygenase from Alicyclobacillus Acidocaldarius | 2019 | H Moon, S Shin, J Choe- Crystals, 2019 - mdpi.com | was obtained using the Molrep program of CCP4 package [13] with Acyl-CoA dehydrogenase (M. thermoresistibile) structure ( PDB ID: 3NF4 ) as a The data collection and refinement statistics are summarized in Table 1. The coordinate and structure factors for apo and FAD |
| 4 | 5upg | - | https://search.proquest.com/openview/c24741440c634a954b90086003c736d2/1?pq-origs... | Widening the Therapeutic Window: Time-Dependent Inhibitors of LpxC and InhA for Treating Multidrug-Resistant Bacterial Infections | 2018 | C Gu - 2018 - search.proquest.com | 46 Figure 2.10. X-ray crystal structure of paLpxC in complex with PF5081090 ( 5UPG . pdb ). ... 48 PD Pharmacodynamics PDB Protein Data Bank PIPES Piperazine-N,N-bis(2-ethanesulfonic acid) Sfp Phosphopantetheinyl transferase SKR Structure -kinetic relationship |
| 5 | 6bfu | - | https://journals.asm.org/doi/abs/10.1128/JVI.02284-20 | Insight into Vaccine Development for Alphacoronaviruses Based on Structural and Immunological Analyses of Spike Proteins | 2021 | Y Shi, J Shi, L Sun, Y Tan, G Wang, F Guo- Journal of, 2021 - Am Soc Microbiol | (B) Overall structure comparison of coronavirus S-trimers. The S-trimer structures of HCoV-229E ( PDB ID: 6U7H), HCoV-NL63 ( PDB ID: 5SZS), PEDV ( PDB ID: 6U7K), FIPV ( PDB ID: 6JX7), PDCoV ( PDB ID: 6BFU ), IBV ( PDB ID: 6CV0), SARS-CoV ( PDB ID: 5X5B), SARS |
| 6 | 5ucm | - | https://books.google.com/books?hl=en&lr=&id=0-L7DwAAQBAJ&oi=fnd&pg=PA69&dq=%225U... | trans-Editing by aminoacyl-tRNA synthetase-like editing domains | 2020 | ABK Nagy, M Bakhtina- Biology of Aminoacyl, 2020 - books.google.com | bound by an autonomous trans- editing factor, such as C. crescentus ProXp-ala ( PDB ID: 5VXB PheRS is also unique in its oligomeric structure it is a heterote- tramer domain ( bound in an editing active conformation will be needed to fully understand the structural basis for |
| 7 | 3d64 | - | http://journals.iucr.org/f/issues/2014/11/00/bo5136/bo5136bdy.html | Crystallization and preliminary X-ray diffraction analysis of the S-adenosylhomocysteine hydrolase (SAHH) from Thermotoga maritima | 2014 | M He, Y Zheng, CH Huang, G Qian, X Xiao… - Structural Biology and …, 2014 - journals.iucr.org | ... 17, 2134-2144.] ), Burkholderia pseudomallei (PDB entry 3d64 ; Seattle Structural GenomicsCenter for Infectious Disease, unpublished work), Trypanosoma ... This model was generated fromthe structure of Mycobacterium tuberculosis SAHH (PDB entry 3dhy ; 43 ... |
| 8 | 3r0o | - | http://link.springer.com/article/10.1007/s00253-015-6551-z | Metabolism of β-valine via a CoA-dependent ammonia lyase pathway | 2015 | M Otzen, CG Crismaru, CP Postema, HJ Wijma… - Applied microbiology …, 2015 - Springer | ... to the Thermus thermophilus PaaG (35 % identity), a predicted 2, 3-dehydroadipyl-CoA hydrataseof which the structure is solved (PDB 3HRX ... searches of the protein encoded by ORF12 showedhomology to Mycobacterium avium carnitinyl-CoA hydratase (3R0O; 48 % identity ... |
| 9 | 3meq | - | http://scripts.iucr.org/cgi-bin/paper?tt5041 | Structure of Escherichia coli AdhP (ethanol-inducible dehydrogenase) with bound NAD | 2013 | LM Thomas, AR Harper, WA Miner? - Acta Crystallographica Section F Structural Biology and Crystallization Communications, 2013 - scripts.iucr.org | ... 2007). J. Appl. Cryst. 40, 658-674.] ). The structure of Brucella melitensis alcohol dehydrogenase (PDB entry 3meq ; Seattle Structural Genomics Center for Infectious Disease, unpublished work) was used as the initial model. The ... |
| 10 | 3hgb | - | https://www.frontiersin.org/articles/10.3389/fbioe.2020.00965/full?report=reader | Mechanism-driven metabolic engineering for bio-based production of free R-lipoic acid in Saccharomyces cerevisiae mitochondria | 2020 | B Chen, JL Foo, H Ling, MW Chang- Frontiers in bioengineering and, 2020 - frontiersin.org | is glycine cleavage system protein H from Mycobacterium tuberculosis ( PDB chain id: 3hgb .1.A domains) were modeled due to the lack of templates with crystal structure of full acetyltransferase component of the pyruvate dehydrogenase complex in Homo sapiens ( PDB |