We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 8DUR | 2022 | 1 |
| 3GVC | 2009 | 1 |
| 6WCT | 2020 | 1 |
| 3MXU | 2010 | 1 |
| 4HR3 | 2012 | 1 |
| 5VCP | 2017 | 1 |
| 3P5M | 2010 | 1 |
| 3GNN | 2009 | 1 |
| 3P85 | 2010 | 1 |
| 8DU1 | 2022 | 1 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 7jvc | - | https://link.springer.com/article/10.1186/s12951-025-03243-y | A bivalent spike-targeting nanobody with anti-sarbecovirus activity | 2025 | IC Swart, OJ Debski-Antoniak, A Zegar- Journal of, 2025 - Springer | Structural alignment of an ACE2 RBD structure ( PDB : 6VW1) [37] with a single molecule of 7F and single RBD showed that the interaction major-interface would not hinder ACE2 |
| 2 | 2lbb | 2l4b | https://arxiv.org/abs/1901.00991 | Physical Folding Codes for Proteins | 2019 | X Ma, C Hou, L Shi, L Li, J Li, L Ye, L Yang- arXiv preprint arXiv, 2019 - arxiv.org | 15 Soares, CM, Teixeira, VH & Baptista, AM Protein Structure and Dynamics in Nonaqueous Solvents: Insights from Nature Structural Biology 10, 980, doi:10.1038/nsb1203-980 (2003 JL The worldwide Protein Data Bank (wwPDB): ensuring a single, uniform archive of PDB data |
| 3 | 3r20 | 3r8c | https://link.springer.com/article/10.1007/s13721-019-0191-7 | Homology modeling and in silico toxicity assessment of potential inhibitors of cytidylate kinase from Mycobacterium tuberculosis | 2019 | MA Isa- Network Modeling Analysis in Health Informatics and, 2019 - Springer | Six templates ( PDB CODE: 3R20 , 3R8C, 1Q3T, 1CKE, 2CMK, and 4E22) were selected based on the An alignment of the CMK and the 3R20 revealed that their structures share a 74.0 Ten structural models of CMK were generated, and the structure with the least DOPE and fold |
| 4 | 3sbx | 3qh8 | http://onlinelibrary.wiley.com/doi/10.1002/prot.25328/full | Deciphering common recognition principles of nucleoside mono/di/and triphosphates binding in diverse proteins via structural matching of their binding sites | 2017 | R Bhagavat, N Srinivasan - Proteins: Structure, , 2017 - Wiley Online Library | ... The super-types are S1) 3CYI, 3HYO, 2ZKJ, 3QUR, 3SBX , 3PNL and 2QV7; S2) 3T7M, 3L31, 3EVD, 3QXH, 3H5N and 2B56; ... classification of this type groups the set of known NTP binding sites in PDB , which are more ... PROTEINS: Structure , Function, and Bioinformatics ... |
| 5 | 6bfu | 6nb4 | https://www.biorxiv.org/content/10.1101/2020.03.04.976258v1.abstract | Cryo-electron microscopy structure of the SADS-CoV spike glycoprotein provides insights into an evolution of unique coronavirus spike proteins | 2020 | S Ouyang- BioRxiv, 2020 - biorxiv.org | lower and outer side of S1-CTDs arranged as a big triangle. This architecture , 157 ie, CTD sandwiched by its own NTD and the adjacent NTD, comes into being 158 189 (G). Cryo-EM structure of SADS-CoV S monomeric subunit. The structural 190 |
| 6 | 6d9y | 6d9n | http://search.ebscohost.com/login.aspx?direct=true&profile=ehost&scope=site&auth... | Protein secondary structure online server predictive evaluation | 2019 | - Chinese Journal of Bioinformatics, 2019 - search.ebscohost.com | 1 SPIDER Fig.1 Main structure of SPIDER 2.1 |
| 7 | 3u5w | - | https://www.sciencedirect.com/science/article/pii/S1047847719300516 | The crystal structure of Rv2991 from Mycobacterium tuberculosis: An F420 binding protein with unknown function | 2019 | S Benini, A Haouz, F Proux, P Alzari- Journal of structural biology, 2019 - Elsevier | from M. tuberculosis in complex with F 420 (Ahmed et al., 2016); 3U5W uncharacterized protein of secondary structural elements of the query (Rv2991) that match the target structure by the sequence similarity search by BLASTp when Rv2991was compared to the whole PDB |
| 8 | 3uw1 | - | https://dspace.cuni.cz/handle/20.500.11956/79446 | Understanding the interaction of antibodies and transcription factors with their ligands through structural biology | 2015 | J kerlov - 2015 - dspace.cuni.cz | One such enzyme, ribose-5-phosphate isomerase A from Burkholderia thailandensis (PDB code 3UW1 [157]) also binds its substrate ribose-5-phospate in a linear form in an orientation very similar to that of deoxyribose-5-phosphate in C-DeoR |
| 9 | 4dq8 | - | https://link.springer.com/article/10.1007/s00044-020-02519-2 | Green synthesis, antitubercular evaluation, and molecular docking studies of ethyl 3, 5-dicyano-6-oxo-2, 4-diarylpiperidine-3-carboxylate derivatives | 2020 | T Sekhar, P Thriveni, K Ramesh, PG Prasad- Medicinal Chemistry, 2020 - Springer | Full size image. Fig. 4 figure4. a 3D structure view of molecular docking of compound 4c (green sticks) with Mycobacterium AckA protein (gray lines) The PDB file of the target protein downloaded from RCSB PDB (www.rcsb.org), AckA (PDBID: 4DQ8 ) |
| 10 | 4iuj | - | https://www.nature.com/articles/s41589-024-01813-z | PROTAR Vaccine 2.0 generates influenza vaccines by degrading multiple viral proteins | 2025 | C Zhang, J Hou, Z Li, Q Shen, H Bai, L Chen- Nature Chemical, 2025 - nature.com | Data Bank ( PDB ) under accession numbers 4WSB, 4WSB, 4IUJ , 2IQH, 7JM3 and 4OPH, respectively. The 3D structure of influenza B viral PA protein was deposited to the PDB under |