We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 8D2Z | 2023 | 0 |
| 8D57 | 2022 | 0 |
| 7TXX | 2022 | 0 |
| 8DF5 | 2022 | 0 |
| 7TWZ | 2022 | 0 |
| 4POB | 2014 | 0 |
| 4PPW | 2014 | 0 |
| 8DGD | 2023 | 0 |
| 8DIM | 2022 | 0 |
| 7TOT | 2022 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3ijp | - | http://www.biochemj.org/content/early/2017/11/28/BCJ20170709.abstract | Plant DHDPR forms a dimer with unique secondary structure features that preclude higher order assembly | 2017 | SAJ Watkin, JR Keown, E Richards- Biochemical, 2017 - biochemj.org | Cirilli, M., Zheng, RJ, Scapin, G., and Blanchard, JS (2003) The three-dimensional structures of the Structural and mutagenic analysis of relaxed nucleotide specificity Scapin, G., Reddy, SG, Zheng, R., and Blanchard, JS (1997) Three-dimensional structure 490 of Escherichia |
| 2 | 3fs2 | - | http://www.springerlink.com/index/E576207H464067U5.pdf | In silico quest for putative drug targets in Helicobacter pylori HPAG1: molecular modeling of candidate enzymes from lipopolysaccharide biosynthesis pathway | 2012 | M Sarkar, L Maganti, N Ghoshal, C Dutta - Journal of molecular modeling, 2012 - Springer | ... Fig. 7 Sequence alignment of 2-dehydro-3-deoxyphosphoocto- nate aldolase of H. pylori HPAG1 with template proteins from Aquifex aeolicus (PDB id: 1fx6), Haemophilus influenza (PDB id: 1o60) and Brucella melitensis (PDB id: 3fs2). ... |
| 3 | 5unb | - | https://pdfs.semanticscholar.org/9d45/bcaa3c016845d28a2001ff2f58c6ca8ea726.pdf | Supplementary materials to PconsC4: fast, free, easy, and accurate contact predictions. | 2018 | M Michel, D Menndez-Hurtado, A Elofsson - 2018 - pdfs.semanticscholar.org | PconsC4 is trained on a set of 2759 proteins culled from PDB using PISCES (Wang and in (Michel et al., 2017) and the 46 proteins from CASP12 with available structures , Table S6 It is pre-trained to predict secondary structure and surface accessibility for each residue (golden |
| 4 | 3sdw | 3sgw, 3qd5, 4em8, 3s5p | http://search.proquest.com/openview/d609872dcf4202be5c1c8582c3e46eb9/1?pq-origsi... | Evaluation of Trypanosoma brucei asparagine synthetase A and ribose 5-phosphate isomerase B as potential drug targets | 2015 | IMS Loureiro - 2015 - search.proquest.com | ... Figure 9. Licensed current therapies against HAT. (A) Structures of drugs used to treat. early and late stage disease. ... PARP procyclic acidic repetitive protein. PDB Protein Data Bank. ... molecules with a conserved core structure of glycosylphosphatidylinositol (GPI) anchored. ...Coccidioides immintis (PDB 3QD5, 3SDW and 3SGW) (Min et al, 2002), Anaplasma phagocytophilum (PDB 4EM8), Clostridium thermocellium (PDB 3PH3, 3PH4 3HEE, and 3HE8) (Jung et al, 2011), Giardia lamblia (PDB 3S5P) |
| 5 | 4dz6 | - | http://www.springerlink.com/index/U317127747468386.pdf | Reflections on biocatalysis involving phosphorus | 2012 | GM Blackburn, MW Bowler, Y Jin, JP Waltho - Biochemistry (Moscow), 2012 - Springer | ... Moreo v er , kindred results can be deriv ed fro m metav ana - date co mplexes, as for the recent structure of a nucleoside diphosphate kinase with ADP linked through v anadate to His134. This show s O–P–N distance of 4.48 Å and an angle of 172.11° (PDB: 4DZ6) ... |
| 6 | 3p4i | 4dq8 | http://uir.unisa.ac.za/handle/10500/19148 | Mycobacterium tuberculosis kinases as potential drug targets: production of recombinant kinases in E. coli for functional characterization and enzyme inhibition | 2015 | V Lukman - 2015 - uir.unisa.ac.za | ... Other mycobacterial AKs have been deposited in the Protein Data Bank (www.pdb.org), with high levels of similarity to the putative Mtb AK (M. avum, pdb 3P4I at 74.4% and M. marinum pdb 4DQ8 at 75.1%). ... |
| 7 | 3kre | - | http://scripts.iucr.org/cgi-bin/paper?fw5260 | Cloning, expression, purification, crystallization and preliminary X-ray diffraction analysis of SAICAR synthase from Streptococcus suis serotype 2 | 2010 | X Cheng, G Lu, J Qi, H Cheng, F Gao? - Acta Crystallographica Section F Structural Biology and Crystallization Communications, 2010 - scripts.iucr.org | ... F62, 335-339.] ), Ehrlichia chaffeensis (PDB code 3kre ; Seattle Structural Genomics Center for Infectious Disease, unpublished work) and Pyrococcus horikoshii OT3 (Manjunath et al., 2010 [Manjunath, K., Jeyakanthan, J., Nakagawa, N., Shinkai, A., Yoshimura, M., Kuramitsu, S ... |
| 8 | 3fdz | - | http://oai.dtic.mil/oai/oai?verb=getRecord&metadataPrefix=html&identifier=ADA594... | Metabolic Signaling and Therapy of Lung Cancer | 2013 | J Chen - 2013 - DTIC Document | ... PGAM1. (A) Cartoon representation of 2,3- BPG location from structure 3FDZ superposed on PGAM1 (PDB ID: 1YFK). H11 and Y92 are directly proximal to and Y26 is also close to cofactor (2,3-BPG)/substrate (3-PG) binding site. ... |
| 9 | 3pm6 | - | http://lib.dr.iastate.edu/cgi/viewcontent.cgi?article=4202&context=etd#page=25 | Chapter 2. Aldolase oligomerization relates to specific dynamics essential to carry out its function | 2013 | AR Katebi, RL Jernigan, LHB Center - Building and simulating protein machines, 2013 - lib.dr.iastate.edu | ... used in the multiple sequence alignment, we use subunits from the following PDB Ids: B. anthracis?3Q94; C. immitis?3PM6; C. jejune ... software suite [13-15] to model the missing loop regions of the FBA structures retrieved from the Protein Data Bank [16 ... E. coli FBA: PDB Id?1ZEN ... |
| 10 | 3hhe | - | http://www.sciencedirect.com/science/article/pii/S109332631730356X | In silico identification of inhibitors of ribose 5-phosphate isomerase from Trypanosoma cruzi using ligand and structure based approaches | 2017 | V de VC Sinatti, LPR Baptista, M Alves-Ferreira - Journal of Molecular , 2017 - Elsevier | ... Abbreviations: LB, Ligand-Based pharmacophore hypothesis; SB, Structure -Based pharmacophore hypothesis. ... bound to R5P substrate ( PDB ID: 3K7S) and bound to the 4PEH ( PDB ID: 3K8C) [12 ... as query and the 1XTZ (identity of 46%), 1LK7 (identity of 42%), 3HHE (identity ... |