We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 6WCT | 2020 | 1 |
| 7K46 | 2020 | 1 |
| 7L6S | 2021 | 1 |
| 7L9U | 2021 | 1 |
| 7LUY | 2021 | 1 |
| 7MCJ | 2022 | 1 |
| 7N4D | 2021 | 1 |
| 7N56 | 2021 | 1 |
| 4Z04 | 2015 | 1 |
| 5ER6 | 2015 | 1 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 5ifz | - | https://academic.oup.com/nar/advance-article-abstract/doi/10.1093/nar/gky1114/51... | SIFTS: updated Structure Integration with Function, Taxonomy and Sequences resource allows 40-fold increase in coverage of structure-based annotations for | 2018 | JM Dana, A Gutmanas, N Tyagi, G Qi- Nucleic acids, 2018 - academic.oup.com | 5.3.1.34 D-erythrulose 4-phosphate isomerase Q9ZB26 99% 5ifz 5.3.1.6 Ribose-5 of the protein sequence space 40-fold, expanding the applicability of structure -based an positions from Ensembl enables a more direct cross-referencing of genomic data from PDB structures |
| 2 | 3uw1 | - | http://onlinelibrary.wiley.com/doi/10.1111/febs.12856/full | Structure of the effector‐binding domain of deoxyribonucleoside regulator DeoR from Bacillus subtilis | 2014 | J Škerlová, M Fábry, M Hubálek, Z Otwinowski… - FEBS …, 2014 - Wiley Online Library | ... Superposition of the CggR structure with the C-DeoR structures provides RMSD values of 2.6and 2.7 Å for effector-bound and free ... view in (A). (C) Superposition of C-DeoR (green) withribose-5-phosphate isomerase A from B. thailandensis (gold, PDB code 3UW1) [11] in ... |
| 3 | 3dmp | - | http://www.sciencedirect.com/science/article/pii/S0141813016304482 | Unravelling the Potential of a New Uracil Phosphoribosyltransferase (UPRT) from Arabidopsis thaliana in Sensitizing HeLa Cells towards 5-Fluorouracil | 2016 | S Narayanan, P Sanpui, L Sahoo, SS Ghosh - International journal of , 2016 - Elsevier | ... UPRT templates from Protein Data Bank (PDB) PDB: 2EHJ (E. coli UPRT), PDB: 3DMP(Burkholderia pseudomallei UPRT) and PDB: 1BD4 (Toxoplasma gondii UPRT) were chosenfor generating the three ... 1). The three-dimensional structure of AtUPRT ( Fig. ... |
| 4 | 3hwk | - | http://www.sciencedirect.com/science/article/pii/S104784771000328X | Crystal structure of< i> Salmonella typhimurium</i> 2-methylcitrate synthase: Insights on domain movement and substrate specificity | 2011 | S Chittori, HS Savithri, MRN Murthy - Journal of Structural Biology, 2011 - Elsevier | ... In contrast, structural comparison of StPrpC with Mycobacterium tuberculosis GltA1 (MtGltA1; PDB: 3HWK; unpublished results) and Pyrococcus furiosus CS (PfGltA; type-I CS with shorter N-terminal) showed significant similarity in the core structure as well as in the flanking C-terminal extension... |
| 5 | 4kna | - | http://aem.asm.org/content/83/12/e00018-17.short | Five Fatty Aldehyde Dehydrogenase Enzymes from Marinobacter and Acinetobacter spp. and Structural Insights into the Aldehyde Binding Pocket | 2017 | JH Bertram, KM Mulliner, K Shi - Applied and , 2017 - Am Soc Microbiol | ... The closest homologous structures currently available are those reported under PDB accession no. 4KNA (N-succinylglutamate 5-semialdehyde dehydrogenase from Burkholderia thailandensis) and 3JU8, with amino acid sequence identities of 63% and 62%, respectively. ... |
| 6 | 3d64 | - | http://journals.iucr.org/f/issues/2014/11/00/bo5136/bo5136bdy.html | Crystallization and preliminary X-ray diffraction analysis of the S-adenosylhomocysteine hydrolase (SAHH) from Thermotoga maritima | 2014 | M He, Y Zheng, CH Huang, G Qian, X Xiao… - Structural Biology and …, 2014 - journals.iucr.org | ... 17, 2134-2144.] ), Burkholderia pseudomallei (PDB entry 3d64 ; Seattle Structural GenomicsCenter for Infectious Disease, unpublished work), Trypanosoma ... This model was generated fromthe structure of Mycobacterium tuberculosis SAHH (PDB entry 3dhy ; 43 ... |
| 7 | 4pq9 | - | http://www.jbc.org/content/early/2019/09/09/jbc.RA119.010619.short | A subfamily roadmap for functional glycogenomics of the evolutionarily diverse Glycoside Hydrolase Family 16 (GH16) | 2019 | AH Viborg, N Terrapon, V Lombard, G Michel- Journal of Biological, 2019 - ASBMB | by the presence of numerous helical elements on the core -jelly-roll fold, two in the N-terminal region and four in the C- terminal region, most of which are located on the opposite side of the structure from the active A tryptophan (W154 in PDB ID 4PQ9 (unpublished)) present |
| 8 | 3enk | - | http://www.sciencedirect.com/science/article/pii/S0003269710007165 | Highly selective l-threonine 3-dehydrogenase from< i> Cupriavidus necator</i> and its use in determination of l-threonine | 2011 | T Ueatrongchit, Y Asano - Analytical Biochemistry, 2011 - Elsevier | ... BaGluE, UDP-glucose 4-epimerase from Bacillus anthracis (2C20); BpGluE, UDP-glucose 4-epimerase from Burkholderia pseudomallei (3ENK); SvDHT, DTDP-glucose 4,6-dehydratase from Streptomyces venezuelae (1R66); ... |
| 9 | 3u40 | - | http://dx.plos.org/10.1371/journal.pone.0044282 | Insights into Phosphate Cooperativity and Influence of Substrate Modifications on Binding and Catalysis of Hexameric Purine Nucleoside Phosphorylases | 2012 | PO de Giuseppe, NH Martins, AN Meza? - PloS one, 2012 - dx.plos.org | ... Structural superposition of BsPNP233-Ado (magenta carbon atoms), B. cereus adenosine phosphorylase (BcAdoP)-Ado-SO 4 (green carbon atoms, PDB code 3UAW [52]) and Entamoeba histolytica PNP-Ado (cyan carbon atoms, PDB code 3U40 [55]) complexes. ... |
| 10 | 4wbs | - | https://scripts.iucr.org/cgi-bin/paper?ft5098 | The structure of lipopolysaccharide transport protein B (LptB) from Burkholderia pseudomallei | 2019 | G Pankov, A Dawson, WN Hunter- Section F: Structural Biology, 2019 - scripts.iucr.org | A single polypeptide from Paraburkholderia phymatum LptB ( PDB entry 4wbs ; Seattle Structural Genomics Center 2. The LptB subunit fold is conserved and displays no major conformational differences irrespective of whether the cofactor is present in the structure or not |