We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 7TXZ | 2022 | 0 |
| 7TXX | 2022 | 0 |
| 8EWA | 2022 | 0 |
| 8F8U | 2022 | 0 |
| 7TWZ | 2022 | 0 |
| 8FBM | 2023 | 0 |
| 8FI3 | 2022 | 0 |
| 5DWM | 2015 | 0 |
| 7TOT | 2022 | 0 |
| 8FI4 | 2022 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 4gri | 4g6z | http://www.ingentaconnect.com/content/ben/ctmc/2016/00000016/00000006/art00006 | Interplay between Catalysts and Substrates for Activity of Class Ib Aminoacyl-tRNA Synthetases and Implications for Pharmacology | 2016 | P Stephen, SX Lin, R Gieg - Current topics in medicinal , 2016 - ingentaconnect.com | ... Eukarya) and limited records for ArgRS (13 PDB entries) and LysRS-1 (1 PDB entry ... with that ofEcoGlnRS and dem- onstrated the presence of GluRS-specific secondary-structure insertions ...aaRS:small ligands Eco (4OBY) Bbu(4GRI) Bth(4G6Z) Tel (2CFO) Tma (3AFH) Tth (1J09 ... |
| 2 | 4g5d | 4gie | http://www.biochemj.org/content/475/16/2593.abstract | A role for trypanosomatid aldo-keto reductases in methylglyoxal, prostaglandin and isoprostane metabolism | 2018 | AJ Roberts, J Dunne, P Scullion, S Norval- Biochemical, 2018 - biochemj.org | Multiple sequence alignment of SakRI, TcAKR (TcCLB.511287.49), LiPGFS1 (LinJ.31.2210), LiPGFS2 (LinJ.32.0470) and TbPGFS (Tb927.11.4700). The conserved AKR catalytic tetrad identified in T. brucei is marked by the red boxes. Blue boxes indicate solvent accessible cysteine residues identified in the crystal structures of TbPGFS TcAKR and LiPGFS2 (PDB accession numbers 1VBJ, 4GIE and 4G5D) [27]. Orange box highlighting Y51C allelic variation was observed in CL-Brener. |
| 3 | 5vog | 4mh4 | https://www.tdx.cat/handle/10803/663022 | Phase Combination and its Application to the Solution of Macromolecular Structures: Developing ALIXE and SHREDDER | 2018 | CL Milln Nebot - 2018 - tdx.cat | Table 1 Test set for performance evaluation of SHREDDER and ALIXE... ID PDB 5VOG solvent content |
| 4 | 4n5f | 4m9a | http://www.mdpi.com/1420-3049/22/10/1722 | Binding Direction-Based Two-Dimensional Flattened Contact Area Computing Algorithm for ProteinProtein Interactions | 2017 | BS Kang, GK Pugalendhi, KJ Kim- Molecules, 2017 - mdpi.com | ... To determine the interactions between protein structures , they used the solvent-excluded surface (SES) for each protein structure , measured the distance between point pairs from two solvent-excluded ... PISA is used to select the dimeric structure in the PDB (Protein Data Bank ... Table 1. Computed binding directions and area ratios. 4N5F 0.681050 |
| 5 | 3rd7 | 3u0a | http://journals.iucr.org/d/issues/2015/04/00/mn5084/stdsup.html | Structural and functional characterization of TesB from Yersinia pestis reveals a unique octameric arrangement of hotdog domains | 2015 | CMD Swarbrick, ME Perugini, N Cowieson… - Biological …, 2015 - journals.iucr.org | ... marinum; however, a further two structures have been solved and annotated as TesB thioesterasesfrom M. avium (PDB entries 3rd7 and 4r9z ... Thus, much of the current understanding regarding thisclass of thioesterases been built on the E. coli structure, with the other ... |
| 6 | 4q12 | 4pzu | http://pubs.acs.org/doi/abs/10.1021/acs.biochem.7b00506 | Biochemical Investigation of Rv3404c from Mycobacterium tuberculosis | 2017 | MM Dunsirn, JB Thoden, M Gilbert, HM Holden - Biochemistry, 2017 - ACS Publications | ... and 4Q12). Whereas this protein was suggested to be a sugar N-formyltransferase, ... RelevantX-ray data collection statistics are listed in Table 1. The structure was solved via molecularreplacement with PHASER21 and using PDB entry 4PZU as a search probe. ... |
| 7 | 4emd | 4ed4, 4dxl | http://commons.lib.niu.edu/handle/10843/21449 | Evaluation of IspE for inhibitor design in the non-mevalonate pathway | 2018 | KB Hoerchler - 2018 - commons.lib.niu.edu | crystal structures were obtained ( PDB : 1UEK, 1OJ4).38,39 IspE possesses structural features Figure 1-5. Crystal Structures of MaIspE The left structure ( PDB : 4EMD ) co-crystallized with CMP and a sulfate ion while the right ( PDB : 4ED4) co-crystallized with ATP.42 |
| 8 | 4f2n | 4f40 | https://www.recima21.com.br/index.php/recima21/article/view/148 | DOCKING MOLECULAR E AVALIAO DA ATIVIDADE ANTILEISHMANIA IN VITRO DE UM COMPLEXO METLICO DE RUTNIO COM EPIISOPILOTURINA E | 2021 | J Arajo- -Revista Cientfica Multidisciplinar-ISSN 2675-6218, 2021 - recima21.com.br | The 3D protein structures of L. major targets were obtained from the Protein Data Bank ( PDB ) database with codes 1e7w (Pteridine reductase), 5nzg (UDP-glucose Pyrophosphorylase), 5g20 (Glycyl Peptide N-tetradecanoyltransferase), 5c7p Enzimas Identificao PDB 4F2N |
| 9 | 3r8c | 4em8, 3te8 | http://repositories.lib.utexas.edu/handle/2152/24852 | Scoring functions for protein docking and drug design | 2014 | S Viswanath - 2014 - repositories.lib.utexas.edu | ... are also found in cell membranes, which is a hydrophobic (non-polar and water-repelling) environment. Figure 1.1 shows two complexes in the Protein Data Bank (PDB)[6, 7]. Figure 1.1 (a) is a structure of soluble complex (PDB ID 3hct) [6], which is a structure of ... |
| 10 | 3eiz | 3i4t | http://www.turkjbiochem.com/2014/435-442.Ek2.pdf | High pKa variability of cysteine residues in structural databases and the effect of H-bond contributions | 2014 | SM Marino, İ Soylu - Türk Biyokimya Dergisi [Turkish Journal of …, 2014 - turkjbiochem.com | ... High pKa variability of cysteine residues in structural ... RESULTS of ppka3 on PDB-crystal datasetprot=protein name res_num=residue number H-bond=hydrogen bond contribution to pKaprediction (pKa) Coul=electrostatics (from Coulombic interactions) contribution to pKa ... |