We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 4G7F | 2012 | 11 |
| 6XDH | 2020 | 11 |
| 3GAF | 2009 | 10 |
| 6N38 | 2018 | 10 |
| 4NCX | 2014 | 10 |
| 5HA4 | 2016 | 10 |
| 4KAM | 2013 | 10 |
| 5IDV | 2016 | 10 |
| 5UPG | 2017 | 10 |
| 6MG6 | 2018 | 10 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 4jgb | 4jga | https://royalsocietypublishing.org/doi/abs/10.1098/rsob.200099 | TAK1: a potent tumour necrosis factor inhibitor for the treatment of inflammatory diseases | 2020 | J Totzke, SA Scarneo, KW Yang- Open, 2020 - royalsocietypublishing.org | A general core structure for type II binders has been developed, consisting of a hydrophobic moiety Structural disorder of this region is often cited as a reason for the missing residues of Ligand 10 (purple, PDB 4JGA), 11 (orange, PDB 4JGB ) and 12 (dark green, PDB 4JGD) are |
| 2 | 2klx | 3hhj, 3fq3 | https://www.sciencedirect.com/science/article/pii/S0888754319304598 | Potential druggable proteins and chimeric vaccine construct prioritization against Brucella melitensis from species core genome data | 2019 | M Aslam, M Shehroz, M Shah, MA Khan, SG Afridi- Genomics, 2019 - Elsevier | The radius of gyration was also predicted to assess the compactness of structure and the Gene symbols, PDB homolog ID's, Protein Names, Model C-score, Template Vs model RMSD BME_RS00875, 2KLX , glutaredoxin 3, 0.89, 2.0 1.6 , 98.718, 2.88, 0.99 (26), 9419.75, 3.27 |
| 3 | 3iml | 3tde, 3s82, 3rv2 | https://febs.onlinelibrary.wiley.com/doi/abs/10.1111/febs.12784 | Understanding molecular recognition of promiscuity of thermophilic methionine adenosyltransferase sMAT from Sulfolobussolfataricus | 2014 | F Wang, S Singh, J Zhang, TD Huber- The FEBS, 2014 - Wiley Online Library | containing a nonnative product, and cumulatively these structures add new structural insight into the analysis here are the numbers from the AdoEth bound structure ( PDB code 4L2Z). To date, MAT structures from Escherichia coli [3, 4], Campylobacter jejuni [5], Burkholderia pseudomallei (PDB code 3IML), Entamoeba histolytica (PDB code 3SO4), Mycobacterium marinum (PDB code 3RV2), Mycobacterium avium (PDB code 3S82), Mycobacterium tuberculosis (PDB code 3TDE), Thermococcus kodakarensis [6], ... |
| 4 | 3uam | - | http://www.jbc.org/content/288/18/12828.short | Crystal structure and computational characterization of the lytic polysaccharide monooxygenase GH61D from the basidiomycota fungus Phanerochaete chrysosporium | 2013 | M Wu, GT Beckham, AM Larsson, T Ishida? - Journal of Biological Chemistry, 2013 - ASBMB | ... date, there are five LPMO structures from five different fungal GH61s available: H. jecorina GH61B (Protein Data Bank (PDB) code 2VTC ... PDB code 2XWX) (17), Enterococcus faecalis CBM33 (PDB code 4A02) (18), and Burkholderia pseudomallei CBM33 (PDB code 3UAM ... |
| 5 | 4w65 | - | https://www.mdpi.com/1420-3049/23/7/1555 | Isolation of -1, 3-Glucanase-Producing Microorganisms from Poria cocos Cultivation Soil via Molecular Biology | 2018 | Q Wu, X Dou, Q Wang, Z Guan, Y Cai, X Liao- Molecules, 2018 - mdpi.com | The glycoside hydrolase -1,3-glucanase, extensively distributed among plants, fungi, and bacteria, acts on 1,3--glucosidic bonds of structural -1,3-glucans to hydrolyze or transfer glycosides [1,2]. Based on the hydrolysis position, -1,3-glucanases are divided into endo-type |
| 6 | 7jv2 | 7jva | https://www.cell.com/cell-reports/pdf/S2211-1247(21)01652-1.pdf | Structural analysis of receptor binding domain mutations in SARS-CoV-2 variants of concern that modulate ACE2 and antibody binding | 2021 | D Mannar, JW Saville, X Zhu, SS Srivastava- Cell reports, 2021 - cell.com | See Table S2 for PDB entries included in this analysis. (D) Structural overlap of all antibodies selected on the SARSCoV-2 RBD. Mutational positions within the RBD are highlighted. (E) |
| 7 | 3oa1 | - | https://www.sciencedirect.com/science/article/pii/S1879625718301743 | Status of antiviral therapeutics against rabies virus and related emerging lyssaviruses | 2019 | V Du Pont, RK Plemper, MJ Schnell- Current opinion in virology, 2019 - Elsevier | RABV drug profiles, past efforts to address the problem and inhibitor candidates identified, and examine how the rapidly expanding structural insight into RABV protein organization has illuminated novel druggable target candidates ... The solved crystal structure for the N0 binding domain is depicted in teal (PDB 3OA1). The solved crystal structure for the dimerization domain is depicted in green and pink with both top and side views... |
| 8 | 3q8n | - | http://www.sciencedirect.com/science/article/pii/S0734975014001992 | Bioinformatic analysis of a PLP-dependent enzyme superfamily suitable for biocatalytic applications | 2015 | F Steffen-Munsberg, C Vickers, H Kohls, H Land… - Biotechnology …, 2015 - Elsevier | In this review we analyse structure/sequence-function relationships for the superfamily ofPLP-dependent enzymes with special emphasis on class III transaminase. |
| 9 | 3r9r | - | https://royalsocietypublishing.org/doi/abs/10.1098/rsta.2018.0422 | Structure-guided fragment-based drug discovery at the synchrotron: screening binding sites and correlations with hotspot mapping | 2019 | SE Thomas, P Collins, RH James- of the Royal, 2019 - royalsocietypublishing.org | purine biosynthesis in maintaining the viability of cells and differences in the structural architecture of bacterial The crystals are similar to those of a previously determined structure of MabPurC with a monomer in the asymmetric unit (figure 1b) ( PDB 3R9R , Seattle Structural |
| 10 | 4tv4 | - | https://www.sciencedirect.com/science/article/pii/S0092867419302028 | Cryo-EM Structure and Assembly of an Extracellular Contractile Injection System | 2019 | F Jiang, N Li, X Wang, J Cheng, Y Huang, Y Yang- Cell, 2019 - Elsevier | Overall, the PVC particle displays a simplified structure of the bacterial phage A simplified architecture of T4 phage baseplate lies in the PVC syringe: Pvc5, Pvc7, Pvc8, and Pvc10 form a continuous central spike extending from the inner tube; Pvc11 (D) Initial models of Pvc1, Pvc2, Pvc9 and Pvc11 were built based onPDB: 4TV4, 3J9Q, 2IA7, 5HX2, respectively |