We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 3IPW | 2009 | 0 |
| 5SCX | 2022 | 0 |
| 5SCM | 2022 | 0 |
| 3GNQ | 2009 | 0 |
| 7U2Q | 2022 | 0 |
| 7U2T | 2022 | 0 |
| 4K3Z | 2013 | 0 |
| 4K6C | 2013 | 0 |
| 7U35 | 2022 | 0 |
| 7U4H | 2022 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 5u9p | 3ftp | https://pdfs.semanticscholar.org/eba1/31d1aecdd33eafa513c4bec6c3ec37d01b5b.pdf | Electrical Supporting information | 2018 | F Sha, Y Zheng, J Chen, K Chen, F Cao, M Yan - pdfs.semanticscholar.org | Entry Enzyme GenBank accession no. Amino acid identities with PspPDH [%] Template PDB code TM- scorea Gbind [kcal mol-1] 23 PhpPDH WP_045028254 41.53 4z9y 0.90 -5.71 1.96 24 DfPDH WP_050774712 31.98 5u9p 0.90 -11.90 2.01 |
| 2 | 4g5d | 4h7p, 4h51 | https://papers.ssrn.com/sol3/papers.cfm?abstract_id=4758152 | Targeting Leishmania with Nitrovinyl Derivatives: Synthesis, in Vitro Assessment, and Computational Exploration | 2024 | A Asadipour, F Ghelich Khani, F Sharifi- Vitro Assessment, and - papers.ssrn.com | nitrovinyl pharmacophore within the structures of -nitrostyrenes PDB files were employed throughout all procedures, each Ligand interactions of compound 17 with 4G5D (left) and 19 ... several notable high-probability outcomes are evident, with the scores associated with the 1XTP (a SAM-dependent methyltransferase) and 4G5D (Prostaglandin F synthase) receptors exhibiting the highest degree of prominence |
| 3 | 4ohc | - | http://dspace.ncl.res.in:8080/xmlui/bitstream/handle/20.500.12252/2071/TH2183.pd... | Investigations into patterns of interactions involving sequentially neighboring amino acids in functional proteins | 2016 | M Sule - 2016 - dspace.ncl.res.in | Figure 6. The alpha helix in PDB : 3KB9 with the side chain hydrogen bonding pattern between While most motifs comprise primarily of regular secondary structures such as -helices or -sheets, the regions connecting these structural elements are irregular structure elements |
| 4 | 3gwc | 4f4a, 4fkx, 4emd | http://14.139.186.108/jspui/handle/123456789/31568 | PROTEIN-LIGAND INTERACTIONS AND STRUCTURE-BASED INHIBITOR DISCOVERY | 2018 | S Usha, S Selvaraj - 2018 - 14.139.186.108 | i) Target structure A target structure experimentally determined through X-ray crystallography or NMR spectroscopy techniques and deposited in the PDB is the ideal starting point for docking. Structural genomics has accelerated the rate at which target structures are |
| 5 | 3ek1 | 4o5h | https://trace.utk.edu/islandora/object/utk.ir.td%3A13699/datastream/PDF/download... | Cell-Free Enabled Bioproduction and Biological Discovery | 2020 | DC Garcia - 2020 - trace.utk.edu | The combined use of bioinformatic software and structural data has crystal structures or computationally modeled structures to further cull the listed Enzymatic steps are written above the colored arrows and names of ligands and products underneath their molecular structure |
| 6 | 3grk | 4j07, 3tzq, 4eit, 3s55 | http://search.proquest.com/openview/866f26bea089278c732b5974a08038aa/1?pq-origsi... | Crosslinked helix dimers as versatile scaffolds for mimicking topologically complex epitopes | 2018 | MG Wuo - 2018 - search.proquest.com | 1 1.2 Surface architecture variation among PPIs affect ligandability ..... 3 aliphatic core but lacks any heptad repeat structure and knob/hole packing orientation. ( PDB Codes: 1LLM, 1TMX, 3V3E) .... 57 |
| 7 | 3tde | 3s82, 3rv2 | http://www.freepatentsonline.com/9879043.html | Synthesis of non-natural cofactor analogs of S-adenosyl-L-methionine using methionine adenosyltransferase | 2018 | J Thorson, T Huber, J Zhang, S Singh- US Patent 9,879,043, 2018 - freepatentsonline.com | marinum ( PDB code 3RV2), Mycobacterium avium ( PDB code 3S82), Mycobacterium tuberculosis ( PDB code 3TDE ), Rattus norvegicus [36 Protein Data Bank ( PDB ) ID:1RG9), hMAT2A ( PDB ID:2PO2) and hMAT1A ( PDB ID:2OBV) on the hMAT2A homodimeric structure |
| 8 | 3p10 | 3mbm, 3q8h, 3qhd, 3p0z | http://commons.lib.niu.edu/handle/10843/21095 | L-Tryptophan hydroxamic acid derivatives as Burkholderia pseudomallei IspF inhibitors | 2017 | CA Muller - 2017 - commons.lib.niu.edu | bank ( PDB ) file of the Burkholderia pseudomallei IspF crystal structure (3P0Z) was uploaded to AutoDock Tools. The water molecules were removed from the enzyme, as well as any co- crystallized structures (FOL955 and cytidine) and free ions (K+ and Cl-). This cleaned up |
| 9 | 3oj6 | 6cuq, 4o3v | https://www.biorxiv.org/content/10.1101/673897v1.abstract | Combining statistical and neural network approaches to derive energy functions for completely flexible protein backbone design | 2019 | B Huang, Y Xu, H Liu- bioRxiv, 2019 - biorxiv.org | To design a backbone, an intended framework is specified first. This framework defines at a very coarse level the intended backbone architecture , including the numbers For each native structure with the given PDB ID, results of four simulations are plotted in different |
| 10 | 4f82 | 4f4a | http://search.proquest.com/openview/afda5488243a36c7973c912298122359/1?pq-origsi... | Investigating Imatinib-Resistant Mutations in Abl Kinase | 2020 | A Lyczek - 2020 - search.proquest.com | 10 *(52& Illustration of important structural features of imatini< |