We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 5SCN | 2022 | 0 |
| 2MZY | 2015 | 0 |
| 7ULZ | 2022 | 0 |
| 4MG4 | 2013 | 0 |
| 7UMD | 2022 | 0 |
| 4MI2 | 2013 | 0 |
| 7UME | 2022 | 0 |
| 5SCX | 2022 | 0 |
| 7US6 | 2022 | 0 |
| 4N0Q | 2013 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 5unb | - | https://www.biorxiv.org/content/early/2018/11/06/463554.abstract | NEPRE: a Scoring Function for Protein Structures based on Neighbourhood Preference | 2018 | S Liu, X Xiang- bioRxiv, 2018 - biorxiv.org | Based on the testing results and the comparison with several other structure assessment methods, we report that the neighborhood structural correctness. MATERIALS AND METHODS composed of 14,647 PDB structures , which were selected from the NCBI VAST (the vector |
| 2 | 3ek2 | - | http://www.mdpi.com/1422-0067/15/2/2672/pdf | Paclitaxel Induces Apoptosis in Breast Cancer Cells through Different Calcium-Regulating Mechanisms Depending on External Calcium Conditions | 2014 | Z Pan, A Avila, L Gollahon - International journal of molecular sciences, 2014 - mdpi.com | ... 3 2i6x ?10.3 Porphyromonas gingivalis hydrolase 4 3ek2 ?10.3 Burkholderia pseudomallei eonyl reductase ... Two libraries, ?pdb_subset.py? and ?pdb_centermass.py? from the pdb-tools project (https://code.google.com/p/pdb-tools/) were modified and used in Artemis. ... |
| 3 | 2khp | - | http://rave.ohiolink.edu/etdc/view?acc_num=akron1396871078 | Nuclear Magnetic Resonance Spectroscopy in the Study of Protein Complexes | 2014 | SM Bilinovich - 2014 - rave.ohiolink.edu | ... Molecular simulations and docking studies were performed using the pdb coordinates of the NMR determined structure of Brucella melitensis GRX (pdb 2KHP) (Leeper et. al 2011). Autodocking was performed using a copper(I) ion ... |
| 4 | 3gbz | - | https://pubs.rsc.org/--/content/articlehtml/2020/me/c9me00097f | How does evolution design functional free energy landscapes of proteins? A case study on the emergence of regulation in the Cyclin Dependent Kinase family | 2020 | Z Shamsi, D Shukla- Molecular Systems Design & Engineering, 2020 - pubs.rsc.org | PDB ID: 5OSM, 6Q3F, 6Q4A, 6Q4B, 6Q4C, 6Q4D, 6Q4K), G/CDK ( PDB ID: 3GBZ ), and pfpk5 on the GA341 score and have comparable DOPE scores with the CDK2 native structure as shown Template's PDB ID, DOPE score for CMGI, DOPE score for native CDK2, GA341 score |
| 5 | 4wi1 | - | http://csmres.co.uk/cs.public.upd/article-downloads/Drug-targeting-of-one-or-mor... | Drug targeting of one or more aminoacyl-tRNA synthetase in the malaria parasite Plasmodium | 2018 | Y Manickam, R Chaturvedi, P Babbar- Drug Discovery, 2018 - csmres.co.uk | site of Pf-LRScyto effectively and the crystal structure for the editing domain of enzymes with this scaffold is known different inhibitor molecules: halofuginone (HF, yellow PDB ID: 4YDQ), glyburide (violet, PDB ID: 5IFU), TCMDC-124506 (orange, PDB ID: 4WI1 ) and modeled |
| 6 | 5unb | - | https://ora.ox.ac.uk/objects/uuid:bd3dc30e-2835-45d8-b1ba-dafa2f552e98/download_... | Janus kinase inhibition for autoinflammation in DNASE2 deficiency | 2019 | S Nanthapisal, A Cavounidis, H Takeshita- Journal of Allergy and, 2019 - ora.ox.ac.uk | Structural modeling Structural models and figures were prepared by using the ICM software package (MolSoft, San Diego, Calif). A homology model for human DNase II was prepared by using the existing structure from B thailandensis ( PDB 5UNB ) as the model template |
| 7 | 3s6d | - | https://www.biorxiv.org/content/10.1101/2020.12.04.412312v2.abstract | Leptospira interrogans triosephosphate isomerase: exploring the structural determinants of stability, high reaction rate and specificity. | 2020 | V Pareek, V Dhayabarn, H Balaram, PR Krishnaswamy- bioRxiv, 2020 - biorxiv.org | Contrary to our observation for the LiTIM structure , the backbone -CO of Trp11 has previously been observed in other TIMs (eg Page 15. 15 rare example of Glu at position 94 (LiTIM numbering) is in Coccidiodes immitis ( PDB ID: 3S6D ; Figures S2 and S5B) |
| 8 | 5woq | - | http://ijiset.com/vol5/v5s3/IJISET_V5_I03_01.pdf | In-Silico Structural & Molecular Characterization Of Clgr From Mycobacterium Tuberculosis | 2018 | YN Joshi, RD Salunkhe - ijiset.com | was obtained through SWISS MODEL server using resolution 1.8 A structure of ClgR from Mycobacterium smegmatis ( PDB Id: 5woq .2.A K, Bordoli L, Kopp J, Schwede T. The SWISSMODEL Workspace: A web-based environment for protein structure homology modelling |
| 9 | 6pqh | - | https://orca.cf.ac.uk/138637/1/2021HanadiAsiriPhD.pdf | Development of Novel Antibacterial Agents through the Design and Synthesis of Aminoacyl tRNA Synthetase (AaRS) Inhibitors | 2020 | H Asiri, C Simons, E Mantzourani - 2020 - orca.cf.ac.uk | 33 Figure 16: Chemical structures of LysRS and AspRS inhibitors. 34 Figure 17: Chemical structures of AsnRS and AlaRS inhibitors. 34 Figure 21: 3D structure of Thermus thermophilus AsnRS ( pdb : 5ZG8) with two-8 amino acid residues gaps (161-168 and 209-216) identified. Table 7. Elizabethkingia anopheles 6PQH |
| 10 | 5i0p | - | https://www.sciencedirect.com/science/article/pii/S0021925820000964 | Metallo--lactamase domain-containing protein 2 is S-palmitoylated and exhibits acyl-CoA hydrolase activity | 2021 | MIP Malgapo, JM Safadi, ME Linder- Journal of Biological Chemistry, 2021 - Elsevier | JavaScript is disabled on your browser. Please enable JavaScript to use all the features on this page. Skip to main content Skip to article |