We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 3OJ7 | 2010 | 7 |
| 3RSI | 2011 | 7 |
| 5T8S | 2016 | 7 |
| 3U0D | 2011 | 7 |
| 3MEB | 2010 | 7 |
| 3MMT | 2010 | 7 |
| 6CAX | 2019 | 7 |
| 3R9R | 2011 | 7 |
| 4NI5 | 2013 | 7 |
| 3NF4 | 2010 | 7 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 4zju | - | https://www.sciencedirect.com/science/article/pii/S1476927123000208 | Computational docking investigation of phytocompounds from bergamot essential oil against Serratia marcescens protease and FabI: Alternative pharmacological | 2023 | KB Lokhande, A Tiwari, S Gaikwad, S Kore- Biology and Chemistry, 2023 - Elsevier | Also, the binding cavity information of the FabI model was taken from the template structure PDB ID: 4ZJU complexes with NAD crystal ligand and the binding cavity of the FabI model |
| 2 | 3k2h | - | http://pubs.acs.org/doi/abs/10.1021/ci300196g | Structural insights into the molecular basis of the ligand promiscuity | 2012 | N Sturm, J D?saphy, RJ Quinn, D Rognan? - Journal of Chemical Information and Modeling, 2012 - ACS Publications | ... To this purpose, we exploited the information in the Protein Data Bank (PDB)19 to identify ligands involved in complexes with different proteins. ... MATERIALS AND METHODS Identification in the sc-PDB of promiscuous ligands and their targets ... |
| 3 | 5br9 | - | https://onlinelibrary.wiley.com/doi/abs/10.1002/prot.26545 | Protein target highlights in CASP15: Analysis of models by structure providers | 2023 | LT Alexander, J Durairaj- Proteins: Structure, 2023 - Wiley Online Library | structures superimposed on Ferrichrome-bound FhuA ( PDB ( PDB 1QFG, salmon) and FhuA from the target ( PDB 8B14, Red star: first resolved N-terminus of the different structures ... Structure of A. aeolicus TsaB. (A) The overlaid crystal structures of E. coli TsaB (PDB: 4YDU), T. maritima TsaB (PDB: 6N9A), S. typhimurium TsaB (PDB: 3ZET), P. s aeruginosa (PDB: 5BR9) |
| 4 | 6vxx | 6vyb | https://www.ncbi.nlm.nih.gov/pmc/articles/pmc7337389/ | Glycans on the SARS-CoV-2 spike control the receptor binding domain conformation | 2020 | R Henderson, RJ Edwards, K Mansouri, K Janowska- bioRxiv, 2020 - ncbi.nlm.nih.gov | this map yielding a structure aligning to the unmutated 2P structure ( PDB ID 6VXX ) with a one RBD 'up' state structure fit to this map to its unmutated counterpart ( PDB ID 6VYB N234A mutation (Figure 3E and andF).F). However, the limited resolution of this structure limits close |
| 5 | 3uqb | - | http://onlinelibrary.wiley.com/doi/10.1002/pro.2356/full | To fuse or not to fuse: What is your purpose? | 2013 | MR Bell, MJ Engleka, A Malik, JE Strickler - Protein Science, 2013 - Wiley Online Library | ... The protein was crystallized and the structure determined to 1.9Å resolution with SUMO stillattached (labeled). (PDB ID 3UQB, Fox III, Abendroth, Staker, and Stewart, Seattle StructuralGenomics Center for Infectious Disease, deposited Nov. 2011). ... |
| 6 | 3ecd | - | http://mcb.asm.org/content/28/14/4507.short | Single-stranded oligonucleotides can inhibit cytokine production induced by human toll-like receptor 3 | 2008 | CT Ranjith-Kumar, KE Duffy, JL Jordan? - Molecular and cellular biology, 2008 - Am Soc Microbiol | ... (C) The locations of peptides P1 and P2 within the three-dimensional model of 3ECD (PDB accession number, 1ZIW). The peptide spanning residues 211 to 222 is in green, and the one spanning residues 560 to 583 is in yellow. ... |
| 7 | 3p96 | - | https://www.mdpi.com/1424-8247/12/2/66 | Targeting the Serine Pathway: A Promising Approach against Tuberculosis? | 2019 | M Haufroid, J Wouters- Pharmaceuticals, 2019 - mdpi.com | Structural differences can occur from one specie to another, ie, human phosphoserine phosphatase is only composed of the PSP domain while of the pathway in order to inhibit the reaction in an allosteric manner (Figure 7b).... Structure of M. avium (3P96) with domain ACT-I in orange, ACT-II in blue, the linker between two ACT domains in red, PSP catalytic domain in grey, linker between PSP domain and ACT-II in green (b). ... |
| 8 | 3ido | - | https://onlinelibrary.wiley.com/doi/abs/10.1002/mbo3.753 | The role of the tyrosine kinase Wzc (Sll0923) and the phosphatase Wzb (Slr0328) in the production of extracellular polymeric substances (EPS) by Synechocystis | 2019 | SB Pereira, M Santos, JP Leite, C Flores- , 2019 - Wiley Online Library | We clarified the roles of both proteins through biochemical and structural analysis, pro viding the first A threedimensional protein structure alignment was performed using representative LMWPTP sequences from the eukaryote E. histolytica ( PDB : 3ido ; UniProt:C4LSE7 |
| 9 | 3gqt | - | https://onlinelibrary.wiley.com/doi/abs/10.1002/jhet.3617 | Design, Synthesis, and Biological and In Silico Study of FluorineContaining Quinoline Hybrid Thiosemicarbazide Analogues | 2019 | DB Patel, KD Patel, NP Prajapati- Journal of, 2019 - Wiley Online Library | Thus, design, development, and structure modification existing drugs are necessary with highly selective potency on specific strains Entry, Code no. R 1, R 2, R 3, Product, Yield (%)a a Purified yield. 1, 8a, 4CF 3, 6CF 3, ... Figure 4c describes the interaction details of compounds 8d and 8k with PDB: 3GQT; compound 8d showed four H‐bond interactions |
| 10 | 3laa | - | http://scitation.aip.org/content/aip/journal/jcp/139/19/10.1063/1.4830404 | Multiscale multiphysics and multidomain models—Flexibility and rigidity | 2013 | K Xia, K Opron, GW Wei - The Journal of chemical physics, 2013 - scitation.aip.org | ... The conventional dogma of sequence-structure-function2 has been seriously challenged by the ...Structures 1DF4 and 2Y7L (top) represent the high scoring structures, those with scores near 0.9. Structures 2Y7L and 3LAA (bottom) show the typical pattern for correlation scores based on parameter values for the majority of proteins. ... |