Cited Structures: list of articles citing SSGCID structures

We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.

This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.

Cited structures

Structure	Year released	#citations
3TSC	2011	6
3KJR	2009	6
3QH8	2011	6
7SOF	2021	6
7LY0	2021	6
3PK0	2010	6
3M4S	2010	6
3OXK	2010	6
6VEL	2020	6
3PXX	2010	6

Manually reviewed citations

#	PDB	Additional SSGCID structures cited	Link	Title	Year	Citation	Highlighted abstract
1	4j07	-	https://www.sciencedirect.com/science/article/pii/S002235491830306X	Biomedical Applications of Lumazine Synthase	2018	Y Wei, P Kumar, N Wahome, NJ Mantis- Journal of, 2018 - Elsevier	Oligomeric State of LS, Quaternary Structure , Organism, PDB ID 16, 17, 18 Mycobacterium leprae 19 S. cerevisiae 20 Schizosaccharomyces pombe 21, 1DI0 2F59; 2I0F 2OBX 2O6H 2JFB 1C41 2VI5; 2C9B; 2C92; 2C94; 2C97; 2C9D; 1W19; 1W29 4J07 1EJB 1KYV
2	6q04	-	https://www.sciencedirect.com/science/article/pii/S1047847721000186	Spike protein fusion loop controls SARS-CoV-2 fusogenicity and infectivity	2021	D Pal- Journal of Structural Biology, 2021 - Elsevier	The structural and dynamics analyses of the Spike show that its fusion loop spatially organizes three fusion peptides contiguous to each other to synergistically I propose a Contact Initiation Model based on the architecture of the Spike quaternary structure that explains the
3	4wi1	-	https://www.mdpi.com/1422-0067/21/11/3803	Identification of Selective Novel Hits against Plasmodium falciparum Prolyl tRNA Synthetase Active Site and a Predicted Allosteric Site Using in silico Approaches	2020	DW Nyamai, Tastan Bishop- International Journal of Molecular, 2020 - mdpi.com	(B) 2D representation of (a) SANC184; (b) SANC257; (c) SANC264; (d) SANC456; (e) SANC622 (f) TCMDC-124506 ( PDB ID: 4WI1 ); (g) glyburide ( PDB ID: 5IFU SANC236 ligand was unstable during the 20 ns simulation with structure flips at 10, 30, 95, 160, and 180 ns of the
4	3s99	-	https://www.sciencedirect.com/science/article/pii/S037811191930160X	Identification and characterization of ABC transporters for carbohydrate uptake in Thermus thermophilus HB8	2019	M Chandravanshi, A Sharma, PD Gupta, SK Mandal- Gene, 2019 - Elsevier	substantiate the relationship of TTHV089 with XBPs, its three-dimensional tertiary structure was predicted All the programs utilized XBP from E. coli (EcXBP, PDB id: 3M9W, open Further, the structural homology search using the predicted model of TTHV089 shows that apart
5	6tys	-	https://www.mdpi.com/1999-4915/12/3/342	Structural insight into paramyxovirus and pneumovirus entry inhibition	2020	M Aggarwal, RK Plemper- Viruses, 2020 - mdpi.com	19,20,21] have furthermore created a novel opportunity for structure -informed mechanistic Structural information is very limited compared to that available for the paramyxovirus attachment Consequently, crystal structures of prefusion PIV5 and NiV F ectodomains could only be
6	4kzp	-	https://pubs.acs.org/doi/abs/10.1021/acsinfecdis.1c00069	Enzymatic -Oxidation of the Cholesterol Side Chain in Mycobacterium tuberculosis Bifurcates Stereospecifically at Hydration of 3-Oxo-cholest-4,22-dien-24-oyl-CoA	2021	T Yuan, JM Werman, X Yin, M Yang- ACS Infectious, 2021 - ACS Publications	The unique ability of Mycobacterium tuberculosis (Mtb) to utilize host lipids such as cholesterol for survival, persistence, and virulence has made the metabolic pathway of cholesterol an area of great interest for therapeutics development. Herein, we identify and characterize two genes from the Cho-region (... A search model for the apo-protein was created from 4KZP and the holo-protein model was created from the ChsB1 apo-protein model.
7	3gka	-	http://onlinelibrary.wiley.com/doi/10.1002/cctc.201100141/full	Stereopreferences of Old Yellow Enzymes: Structure correlations and sequence patterns in enoate reductases	2011	G Oberdorfer, G Steinkellner, C Stueckler? - ChemCatChem, 2011 - Wiley Online Library	... Table 1. Protein structures used for comparison and cluster generation. Proteins, PDB accession code, Residues (Tyr/Phe/Ile) [a], Stereospecificity [b], Pseudo-atom distance [c] [?], Cluster. ... N-ethylmaleimide reductase, 3gka, Tyr?Tyr, R (ee=62 %)/S [e], 7.5, ...
8	5upg	6cax	https://www.sciencedirect.com/science/article/pii/S0223523423002921	Small molecule LpxC inhibitors against gram-negative bacteria: Advances and future perspectives	2023	Z Niu, P Lei, Y Wang, J Wang, J Yang- European Journal of, 2023 - Elsevier	-diphosphate ( PDB code: 2IER); (C) Crystal structure of the E. coli LpxC/LPC-009 complex ( PDB code: 3P3G); (D) Co-crystal structure of LpxC-3 aeruginosa LpxC ( PDB code: 3UHM).
9	3hzu	3hwi	https://www.nature.com/articles/s41598-019-53069-6	Mycobacterium tuberculosis CysA2 is a dual sulfurtransferase with activity against thiosulfate and 3-mercaptopyruvate and interacts with mammalian cells	2019	AN Meza, CCN Cambui, ACR Moreno, MR Fessel- Scientific reports, 2019 - nature.com	dimensional structures of M. tuberculosis CysA2 ( PDB code 3HIW, yellow), CysA3 ( PDB code 3AAY, red) and SseA ( PDB code 3HZU , blue) Based on the available three-dimensional structure of CysA2, we performed a comparison with putative orthologues studied in the
10	3d64	-	http://www.sciencedirect.com/science/article/pii/S0925443912002165	S-adenosyl-L-homocysteine hydrolase and methylation disorders: Yeast as a model system	2013	O Tehlivets, N Malanovic, M Visram… - … et Biophysica Acta (BBA …, 2013 - Elsevier	... 1. AdoMet — a principal methyl group donor and more. Beyond its role in protein synthesisand structure, methionine, after its activation to AdoMet by methionine adenosyltransferase,plays a crucial role in many aspects of cellular metabolism. ...