We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 3K2X | 2009 | 6 |
| 3R1I | 2011 | 6 |
| 4QGR | 2014 | 6 |
| 3T7C | 2011 | 6 |
| 6U1T | 2019 | 6 |
| 4QFH | 2014 | 6 |
| 3OQ8 | 2010 | 6 |
| 3VAW | 2012 | 6 |
| 3KJR | 2009 | 6 |
| 3NGF | 2010 | 6 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3fs2 | 3ez4, 3ijp | http://www.tandfonline.com/doi/full/10.3109/10611861003649753 | Targeting multiple targets in Pseudomonas aeruginosa PAO1 using flux balance analysis of a reconstructed genome-scale metabolic network | 2011 | D Perumal, A Samal, KR Sakharkar… - Journal of drug …, 2011 - Taylor & Francis | ... 3D structural information of target protein–ligand molecular complexes is a very usefulmethod to identify high-quality drug targets. ... A search against Protein Data Bank (PDB)helped us shortlist targets that had structure available. ... |
| 2 | 4kzp | - | https://pubs.acs.org/doi/abs/10.1021/acsinfecdis.1c00069 | Enzymatic -Oxidation of the Cholesterol Side Chain in Mycobacterium tuberculosis Bifurcates Stereospecifically at Hydration of 3-Oxo-cholest-4,22-dien-24-oyl-CoA | 2021 | T Yuan, JM Werman, X Yin, M Yang- ACS Infectious, 2021 - ACS Publications | The unique ability of Mycobacterium tuberculosis (Mtb) to utilize host lipids such as cholesterol for survival, persistence, and virulence has made the metabolic pathway of cholesterol an area of great interest for therapeutics development. Herein, we identify and characterize two genes from the Cho-region (... A search model for the apo-protein was created from 4KZP and the holo-protein model was created from the ChsB1 apo-protein model. |
| 3 | 2khr | - | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4404324/ | Identification of outer membrane and exoproteins of carbapenem-resistant multilocus sequence type 258 Klebsiella pneumoniae | 2015 | AJ Brinkworth, CH Hammer, LR Olano, SD Kobayashi- PloS one, 2015 - ncbi.nlm.nih.gov | are based on template proteins that have been submitted to the RCSB protein database as crystal structure or NMR data ID, Protein, Length (aa), 1 st Hit PDB , Protein Template, Conf, Id, 2 nd Hit PDB , Template, Conf G8VZH0, Hyp, 1007, 2bcm, DaaE adhesin, 31, 25, 2khr , MbtH |
| 4 | 6q05 | - | https://biointerfaceresearch.com/wp-content/uploads/2020/05/2069583710560396057.... | Evaluation of Coronavirus families & Covid-19 proteins: molecular modeling study | 2020 | M Monajjemi, S Shahriari- Biointerface Res. Appl, 2020 - biointerfaceresearch.com | Several Proteins, receptors, S proteins including s1 and s2 such as 6LU7, 6Q05 , 4oW0, 6nur The Structure Preparation modules of MOE were used to correct PDB inconsistencies and to assign the structural knowledge of the CoV-RNA synthesis complexes was a structure of the |
| 5 | 3r4t | 4ffc | https://www.mdpi.com/1420-3049/23/5/1128 | Novel-Substituted Heterocyclic GABA Analogues. Enzymatic Activity against the GABA-AT Enzyme from Pseudomonas fluorescens and in Silico Molecular Modeling | 2018 | E Tovar-Gudio, J Guevara-Salazar, J Bahena-Herrera- Molecules, 2018 - mdpi.com | molecular docking studies to explain their inhibitory character based in different structural and electronic to the concept of molecular similarity, which states that molecules with similar structure will have Figure 6 shows the cavity of the GABA-AT ( PDB : 1SF2 from Escherichia coli |
| 6 | 4h3e | - | https://www.mdpi.com/2076-3921/9/11/1047 | Parallel Molecular Evolution of Catalases and Superoxide DismutasesFocus on Thermophilic Fungal Genomes | 2020 | K Chovanov, M Bhmer, A Poljovka, J Budi- Antioxidants, 2020 - mdpi.com | and heme catalases were obtained from Phyre-2 server [16] by employing the intensive mode with HMM and PSI-Blast for finding closest homologs with a known experimental structure . Obtained structural models were superimposed on experimental 3D structures using the |
| 7 | 3hgb | - | http://www.sciencedirect.com/science/article/pii/S1097276515004529 | Identification of a Class of Protein ADP-Ribosylating Sirtuins in Microbial Pathogens | 2015 | JGM Rack, R Morra, E Barkauskaite, R Kraehenbuehl… - Molecular cell, 2015 - Elsevier | ... SpyGcvH-L structure is shown in black and canonical GcvH of cattle (PDB: 3KLR), pea (PDB: 1DMX), and M. tuberculosis (PDB: 3HGB) in orange, green, and yellow, respectively. Residue numbers for GcvH-L are given. ... |
| 8 | 7sof | - | https://www.cell.com/immunity/fulltext/S1074-7613(25)00178-5 | Computationally designed proteins mimic antibody immune evasion in viral evolution | 2025 | N Youssef, S Gurev, F Ghantous, KP Brock, JA Jaimes- Immunity, 2025 - cell.com | Figure 3... . The impact of K147 mutations can be seen for NTD antibody S2X303, with interactions to N65, D50, and Y31 on the antibody (PDB: 7SOF). |
| 9 | 5el0 | - | https://onlinelibrary.wiley.com/doi/abs/10.1002/prot.25869 | An overview of data-driven HADDOCK strategies in CAPRI rounds 38-45. | 2019 | PI Koukos, J Roel-Touris, F Ambrosetti, C Geng- bioRxiv, 2019 - biorxiv.org | For the server submission of target 134, we modelled the protein on PDB entry 4d07 and the peptide on 4d07 and 4qh8, threading the target sequence on the peptide structure of the templates 5el0 and followed similar strategies as for target 134. Template-based targets |
| 10 | 4ggq | - | https://www.sciencedirect.com/science/article/pii/S0959440X18300976 | Enzyme targets for drug design of new anti-virulence therapeutics | 2018 | CM Kahler, M Sarkar-Tyson, EA Kibble- opinion in structural, 2018 - Elsevier | Mip from Burkholderia pseudomallei as a complex with a pipecolic acid derivative (CJ40) ( PDB : 4GGQ ) d) Ribbon diagram of the structure of EptA ( PDB : 5FGN a detailed understanding of the mechanism of substrate binding and catalysis will enable a structure guided approach |