We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 5VN4 | 2017 | 5 |
| 3PGZ | 2010 | 5 |
| 3IEW | 2009 | 5 |
| 3PFD | 2010 | 5 |
| 3GBZ | 2009 | 5 |
| 2L4B | 2010 | 5 |
| 4HWG | 2012 | 5 |
| 3ENN | 2008 | 5 |
| 3VAW | 2012 | 5 |
| 4LGO | 2014 | 5 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 5u4s | - | https://www.sciencedirect.com/science/article/pii/S0041008X20305093 | Species-specific differences in the inhibition of 11-hydroxysteroid dehydrogenase 2 by itraconazole and posaconazole | 2020 | SG Inderbinen, M Zogg, M Kley, M Smieko- Toxicology and Applied, 2020 - Elsevier | models were based on the template structure of 11-HSD1 (various PDB IDs), one model on the template structure of 3-oxoacyl-[acyl-carrier-protein] reductase ( PDB ID: 3u9l) and finally one on the template structure of a putative short chain dehydrogenase ( PDB ID: 5u4s ) |
| 2 | 6wps | 6wpt | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7586990/ | Immunological strategies against spike protein: Neutralizing antibodies and vaccine development for COVID19 | 2020 | J Huang, H Huang, D Wang, C Wang- Clinical and, 2020 - ncbi.nlm.nih.gov | Structural data of RBD of SARSCoV2 S protein with CR3022 Fab was retrieved from Protein Databank. (C) Structure of SARSCoV2 S protein with neutralizing antibody S309 Fab fragment ( PDB : 6WPS ) is shown in close state |
| 3 | 6ao8 | - | https://www.sciencedirect.com/science/article/pii/S0022283618302456 | Structure of Escherichia coli Arginyl-tRNA Synthetase in Complex with tRNAArg: Pivotal Role of the D-loop | 2018 | P Stephen, S Ye, M Zhou, J Song, R Zhang- Journal of molecular, 2018 - Elsevier | 14]), Campylobacter jejuni (3FNR, unpublished), Plasmodium falciparum (5JLD[15]), Neisseria gonorrhoeae ( 6AO8 , unpublished), Escherichia crystal structure of EcoArgRS in complex with tRNA Arg (deposited under PDB code: 5YYN) representing the first structure of a |
| 4 | 5vwm | - | https://www.sciencedirect.com/science/article/pii/S0968089620306568 | N-Hydroxyformamide LpxC inhibitors, their in vivo efficacy in a mouse Escherichia coli infection model, and their safety in a rat hemodynamic assay | 2020 | T Furuya, AB Shapiro, J Comita-Prevoir- Bioorganic & Medicinal, 2020 - Elsevier | Fig. 2. Key interactions in the LpxC enzyme binding pocket observed in P. aeruginosa LpxCCHIR-090 (3) co-crystal structure ( PDB code: 5VWM ). We first implemented a docking model using the ICM-Pro software (Molsoft) based on the available co-crystal structures of P |
| 5 | 3i0p | - | http://www.sciencedirect.com/science/article/pii/S0022519310001013 | Helix?helix interactions and their impact on protein motifs and assemblies | 2010 | N Kurochkina - Journal of Theoretical Biology, 2010 - Elsevier | ... Protein, Source, PDB designation. Four-?-helix bundle, Myohemerythrin, Thermiste zostericola, 2 mhr. Hemerythrin, Thermiste discrita, 2hmq. ... Aeropyrum pernix, 2d4a. Entamoeba hystolitica,3i0p. Uridine-diphosphate-galactose 4-epimerase, Trypanosoma brucei, 1gy8. ... |
| 6 | 5cy4 | - | https://www.nature.com/articles/s41598-019-39641-0 | Structural basis of small RNA hydrolysis by oligoribonuclease (Cps ORN) from Colwellia psychrerythraea strain 34H | 2019 | CW Lee, SH Park, CS Jeong, SS Cha, H Park- Scientific reports, 2019 - nature.com | Structure alignment search using DALI server showed that CpsORN exhibited high structural similarity with ORN HinORN; PDB code 1J9A), and Acinetobacter baumannii (AbaORN; PDB code 5CY4 ), and XC847 from Xanthomonas campestris (XcaORN; PDB code 2GBZ |
| 7 | 4zju | - | https://www.sciencedirect.com/science/article/pii/S1476927123000208 | Computational docking investigation of phytocompounds from bergamot essential oil against Serratia marcescens protease and FabI: Alternative pharmacological | 2023 | KB Lokhande, A Tiwari, S Gaikwad, S Kore- Biology and Chemistry, 2023 - Elsevier | Also, the binding cavity information of the FabI model was taken from the template structure PDB ID: 4ZJU complexes with NAD crystal ligand and the binding cavity of the FabI model |
| 8 | 3gvg | - | http://books.google.com/books?hl=en&lr=&id=TSsWBAAAQBAJ&oi=fnd&pg=PP1&dq=%223GVG... | How proteins work | 2011 | M Williamson - 2011 - books.google.com | ... in structure motifs 24 Membrane proteins are different from globular proteins 29 The structureofa protein is (more or less) determined by its sequence 31 Some proteins form metastablestructures 32 Structure is conserved more than sequence 33 Structural homology can be ... |
| 9 | 4h3e | - | https://www.mdpi.com/2076-3921/9/11/1047 | Parallel Molecular Evolution of Catalases and Superoxide DismutasesFocus on Thermophilic Fungal Genomes | 2020 | K Chovanov, M Bhmer, A Poljovka, J Budi- Antioxidants, 2020 - mdpi.com | and heme catalases were obtained from Phyre-2 server [16] by employing the intensive mode with HMM and PSI-Blast for finding closest homologs with a known experimental structure . Obtained structural models were superimposed on experimental 3D structures using the |
| 10 | 4gnv | - | https://pubs.rsc.org/en/content/articlehtml/2018/cc/c8cc05281f | A mechanism-based GlcNAc-inspired cyclophellitol inactivator of the peptidoglycan recycling enzyme NagZ reverses resistance to -lactams in Pseudomonas | 2018 | LA Ho, JL Winogrodzki, AW Debowski- Chemical, 2018 - pubs.rsc.org | Fig. 2 Crystal structure of BcNagZ bound to 2. (A) Electron density (sigma-A weighted difference map (mF o DF c ) contoured at 4) for 2 (green carbon atoms (B) BcNagZ active site bound to 2 (green carbon atoms) with the BcNagZ product complex PDB 4GNV superposed |