We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 3GBZ | 2009 | 5 |
| 2L4B | 2010 | 5 |
| 3PXU | 2010 | 5 |
| 3ENN | 2008 | 5 |
| 3M4S | 2010 | 5 |
| 3HWI | 2009 | 5 |
| 3M1X | 2010 | 5 |
| 3HJA | 2009 | 5 |
| 2LOL | 2012 | 5 |
| 3EJ0 | 2008 | 5 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 5vwm | - | https://www.sciencedirect.com/science/article/pii/S0968089620306568 | N-Hydroxyformamide LpxC inhibitors, their in vivo efficacy in a mouse Escherichia coli infection model, and their safety in a rat hemodynamic assay | 2020 | T Furuya, AB Shapiro, J Comita-Prevoir- Bioorganic & Medicinal, 2020 - Elsevier | Fig. 2. Key interactions in the LpxC enzyme binding pocket observed in P. aeruginosa LpxCCHIR-090 (3) co-crystal structure ( PDB code: 5VWM ). We first implemented a docking model using the ICM-Pro software (Molsoft) based on the available co-crystal structures of P |
| 2 | 5cy4 | - | https://www.nature.com/articles/s41598-019-39641-0 | Structural basis of small RNA hydrolysis by oligoribonuclease (Cps ORN) from Colwellia psychrerythraea strain 34H | 2019 | CW Lee, SH Park, CS Jeong, SS Cha, H Park- Scientific reports, 2019 - nature.com | Structure alignment search using DALI server showed that CpsORN exhibited high structural similarity with ORN HinORN; PDB code 1J9A), and Acinetobacter baumannii (AbaORN; PDB code 5CY4 ), and XC847 from Xanthomonas campestris (XcaORN; PDB code 2GBZ |
| 3 | 4qji | - | https://www.nature.com/articles/s41467-020-20224-x | Inhibiting Mycobacterium tuberculosis CoaBC by targeting an allosteric site | 2021 | V Mendes, SR Green, JC Evans, J Hess- Nature, 2021 - nature.com | Coenzyme A (CoA) is a fundamental co-factor for all life, involved in numerous metabolic pathways and cellular processes, and its biosynthetic pathway has raised substantial interest as a drug target against multiple pathogens including Mycobacterium tuberculosis. The biosynthesis |
| 4 | 4z9n | - | https://link.springer.com/article/10.1007/s00253-018-9073-7 | Characterization of the caprolactam degradation pathway in Pseudomonas jessenii using mass spectrometry-based proteomics | 2018 | M Otzen, C Palacio, DB Janssen- Applied microbiology and biotechnology, 2018 - Springer | 4282 5 1154 Acyl-CoA dehydrogenase 42, Thermus thermophilus 1.3.99.2 2DVL 2532 28 1031 ABC transporter, amino acid binding protein 59, Brucella ovis 4Z9N 3504 39 1922 Serine protein kinase 77, E. coli 2.7.11.1 P0ACY5 |
| 5 | 6nb3 | - | https://www.mdpi.com/1999-4915/13/8/1615 | What Binds Cationic Photosensitizers Better: Brownian Dynamics Reveals Key Interaction Sites on Spike Proteins of SARS-CoV, MERS-CoV, and SARS-CoV-2 | 2021 | V Fedorov, E Kholina, S Khruschev, I Kovalenko- Viruses, 2021 - mdpi.com | M-protein defines the shape of the viral envelope organizing CoVs assembly in the interaction with all other major structural proteins [9 Computational virology tools contribute greatly to the understanding of viral structure , infectivity and pathogenesis, and design of antiviral drugs ... The models of S-proteins of SARS-CoV and MERS-CoV were based on cryo-EM structures from the Protein Data Bank (PDB) with IDs 6NB3 and 5X58, respectively. |
| 6 | 3k2h | - | https://onlinelibrary.wiley.com/doi/abs/10.1111/tpj.13983 | Targeting plant DIHYDROFOLATE REDUCTASE with antifolates and mechanisms for genetic resistance | 2018 | MG Corral, J Haywood, LH Stehl, KA Stubbs- The Plant, 2018 - Wiley Online Library | The homology models of A. thaliana DHFR‐TS1 and DHFR‐TS2 were created ab initio based on the structure of the bifunctional DHFR‐TS enzyme from B. bovis (PDB 3K2H; Begley et al., 2011), using the I‐TASSER server (Zhang, 2008). |
| 7 | 3eg4 | - | http://www.sciencedirect.com/science/article/pii/S0022283609004914 | The three-dimensional Structure of a mycobacterial DapD provides insights into DapD diversity and reveals unexpected particulars about the enzymatic mechanism | 2009 | L Schuldt, S Weyand, G Kefala, MS Weiss - Journal of molecular biology, 2009 - Elsevier | ... coli (PDB entry 3BXY), 7 Campylobacter jejuni (PDB entry 2RIJ, Joint Center for Structural Genomics, unpublished results), Enterococcus faecalis (PDB entry 3CJ8, K. Tan et al., unpublished results) and Brucella melitensis biovar abortus (PDB entry 3EG4, Seattle Structure ... |
| 8 | 3v7o | 5dvw | http://journals.plos.org/plospathogens/article?id=10.1371/journal.ppat.1005937 | The Ebola virus VP30-NP interaction Is a regulator of viral RNA synthesis | 2016 | RN Kirchdoerfer, CL Moyer, DM Abelson - PLoS , 2016 - journals.plos.org | ... the interactions of Ebola, Sudan and Marburg virus VP30 with NP using in vitro biochemistry,structural biology and cell ... here, we further compared our structures to the Reston ebolavirus(RESTV) VP30 CTD (3V7O.pdb [12]) and a more recently determined structure of the ... |
| 9 | 6mfk | - | https://onlinelibrary.wiley.com/doi/abs/10.1002/pro.3793 | Structural and functional characterization of three Type B and C chloramphenicol acetyltransferases from Vibrio species | 2019 | A Alcala, G Ramirez, A Solis, Y Kim, K Tan- Protein, 2019 - Wiley Online Library | from P. aeruginosa ( PDB IDs: 1XAT, 2XAT7) and E. anophelis ( PDB ID: 6MFK ). Known SAT 1(A)]. When we compared our structures of the Vibrio proteins with CATs and SATs from the PDB , we found the The AfCAT structure had |
| 10 | 7k43 | - | https://www.sciencedirect.com/science/article/pii/S2211124722005344 | Structures of Omicron spike complexes and implications for neutralizing antibody development | 2022 | H Guo, Y Gao, T Li, T Li, Y Lu, L Zheng, Y Liu, T Yang- Cell reports, 2022 - Elsevier | The recently reported structural model PDB entry 7T9K (Mannar et al., 2022) was used as an initial template for model building of the Omicron Spike trimer and ACE2. PDB entry 7K43 |