We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 7SBC | 2021 | 4 |
| 4ECP | 2012 | 4 |
| 7RBX | 2021 | 4 |
| 4MH4 | 2013 | 4 |
| 3NGF | 2010 | 4 |
| 4EG0 | 2012 | 4 |
| 6C87 | 2018 | 4 |
| 3GW8 | 2009 | 4 |
| 4MOW | 2013 | 4 |
| 4XK1 | 2015 | 4 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 6q05 | - | https://www.biorxiv.org/content/10.1101/2020.04.17.047548v1.abstract | Distinct structural flexibility within SARS-CoV-2 spike protein reveals potential therapeutic targets | 2020 | SH Chen, MT Young, J Gounley, C Stanley, D Bhowmik- BioRxiv, 2020 - biorxiv.org | of SARS-CoV-2 ( PDB 6VSB [3]), SARS-CoV-1 ( PDB 6CRZ [15]), MERS- CoV ( PDB 6Q05 [16]), and The trimeric state of the SARS-CoV-2 S protein consists of all three chains in PDB 6VSB Each structure was solvated in the center of a water box with a minimum distance of 15 A |
| 2 | 3dmp | - | https://onlinelibrary.wiley.com/doi/abs/10.1002/cctc.201701223 | Enzymatic Production of NonNatural Nucleoside5Monophosphates by a Thermostable Uracil Phosphoribosyltransferase | 2018 | J del Arco, J Acosta, HM Pereira, A Perona- , 2018 - Wiley Online Library | Overall structure and architecture of active site. We have determined the crystal structure of TtUPRT ( PDB 1v9s) at 2.1 resolution (Table 1). The 1o5), UPRT from Escherichia coli (EcUPRT; PDB 2ehj), UPRT from Burkholderia pseudomallei (BpUPRT; PDB 3dmp ), UPRT from |
| 3 | 5u26 | - | https://www.sciencedirect.com/science/article/pii/S0223523423003756 | Comprehensive coverage on anti-mycobacterial endeavour reported during 2022 | 2023 | TM Dhameliya, DD Vekariya, HY Patel- European Journal of, 2023 - Elsevier | reported in 2022 with their mechanism of action, structure activity relationships, along with the key Further, molecular docking revealed compound 76 inhibiting DHFR ( PDB : 5U26 ) and |
| 4 | 5vmt | 3hja | https://www.sciencedirect.com/science/article/pii/S0882401018316140 | Crystal structure of GAPDH of Streptococcus agalactiae and characterization of its interaction with extracellular matrix molecules | 2018 | R Nagarajan, S Sankar, K Ponnuraj- Microbial pathogenesis, 2018 - Elsevier | S1). The protein BLAST against Protein Data Bank ( PDB ) led to 97 hits with recently determined 71% and 69% sequence identity with S. pneumoniae (5M6D), Nessiera gonorrhea ( 5VMT ) and S to mixed-holo structure (highest resolution of 1.36 ), the present structure (Apo, 2.6 |
| 5 | 6n1f | - | https://journals.asm.org/doi/abs/10.1128/mbio.00408-23 | Exaptation of Inactivated Host Enzymes for Structural Roles in Orthopoxviruses and Novel Folds of Virus Proteins Revealed by Protein Structure Modeling | 2023 | P Mutz, W Resch, G Faure, TG Senkevich, EV Koonin- Mbio, 2023 - Am Soc Microbiol | Given that all of the models in this work were compared both to the PDB and to the large database of AlphaFold2 ... OPG20 (C10L), OPG31 (C4L), and OPG165 (A37R) are homologs of hydroxylases.... the 2OG-Fe(II) Oxygenase family of Burkholderia pseudomallei (6n1f |
| 6 | 3md7 | - | http://pubs.acs.org/doi/abs/10.1021/bi2005398 | Structure and mechanism of PhnP, a phosphodiesterase of the carbon-phosphorus lyase pathway | 2011 | SM He, M Wathier, K Podzelinska, M Wong? - Biochemistry, 2011 - ACS Publications | ... distances in angstroms. (d) Wall-eyed stereoview of the PhnP?orthovanadate complex superimposed with B. melitensis phosphodiesterase (PDB entry 3md7) bound to guanosine 5'-monophosphate (gray sticks). PhnP residues ... |
| 7 | 3uam | - | https://link.springer.com/chapter/10.1007/978-981-13-7318-3_6 | Chitin-Active Lytic Polysaccharide Monooxygenases | 2019 | G Courtade, FL Aachmann- Targeting Chitin-containing Organisms, 2019 - Springer | 3UAM . Likely active on chitin. To be published The structures were made using PyMol and the PDB code 2BEM. The copper coordinates were extracted from the PDB code 2YOX The structure is stabilized by hydrophobic residues, as well as by one or two disulfide bridges CANNOT DECIDE, RIGHT TARGET AND FIND PART OF ABOVE SENTENCES BUT NOT 3UAM |
| 8 | 4xk1 | - | https://www.sciencedirect.com/science/article/pii/S014181301930755X | N-terminal residues are crucial for quaternary structure and active site conformation for the phosphoserine aminotransferase from enteric human parasite E. histolytica | 2019 | RK Singh, P Tomar, S Dharawat, S Kumar- International journal of, 2019 - Elsevier | 3. Comparative analysis, using the RAPIDO server, of PSAT structures from various organisms with the EhPSAT structure . PDB IDs, Sequence identity (%), RMSD with EhPSAT monomer in (number of residues compared) 4XK1 (P. aeruginosa) [38], 40, 1.52 (for 337 residues) |
| 9 | 3ief | 3knu | http://www.sciencedirect.com/science/article/pii/S0022283614005798 | Landscape of Intertwined Associations in Multi-Domain Homo-Oligomeric Proteins | 2015 | SS MacKinnon, SJ Wodak - Journal of molecular biology, 2015 - Elsevier | ... In addition, we identified protein structures in the PDB related to each member of our ... We examineddomain re-orientations in these relatives and how the quaternary structure is affected ... This allowedus to characterize the level of structural plasticity in protein families comprising ... |
| 10 | 3o2e | - | https://febs.onlinelibrary.wiley.com/doi/abs/10.1111/febs.15447 | Phosphorylation status of BolA affects its role in transcription and biofilm development | 2021 | L Galego, S Barahona, CV Romo- The FEBS, 2021 - Wiley Online Library | NMR structure of mouse BolA1 ( PDB ID 1V60) and E. coli BolA ( PDB ID 2DHM) reveal a structure with similarity to nucleic acid binding proteins including a helix-turn [6]. MreB is a structural homologue of actin that is essential for cell elongation, maintenance of |