We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 4P9A | 2014 | 4 |
| 4OH7 | 2014 | 4 |
| 4IV5 | 2013 | 4 |
| 3SX2 | 2011 | 4 |
| 4ONY | 2014 | 4 |
| 5V0T | 2017 | 4 |
| 4N5F | 2013 | 4 |
| 4OT8 | 2014 | 4 |
| 7L6C | 2021 | 4 |
| 5BNZ | 2015 | 4 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3ek2 | - | http://www.jbc.org/content/289/23/15987.short | Rational Design of Broad Spectrum Antibacterial Activity Based on a Clinically Relevant Enoyl-Acyl Carrier Protein (ACP) Reductase Inhibitor | 2014 | J Schiebel, A Chang, S Shah, Y Lu, L Liu, P Pan - Journal of Biological Chemistry, 2014 - ASBMB | ... Molecular replacement was performed in Phaser using the PDB entry 3EK2 as a template. ... The structure factors and coordinates of the different FabI structures have been deposited in the ProteinData Bank with the PDB entry codes 4CUZ (saFabI-NADPH-PT173), 4CV1 ... |
| 2 | 3rd5 | - | http://www.jbc.org/content/290/52/30728.short | Pleiotropic Functions of Tumor Suppressor WWOX in Normal and Cancer Cells | 2015 | M Abu-Remaileh, E Joy-Dodson - Journal of Biological , 2015 - ASBMB | ... B, a structural model of the SDR region (generated by the RosettaCM protocol as implemented by the Robetta server (78), starting from PDB ID 3rd5 (58) as a template structure) shows an extended central β sheet formed by Rossmann folds. ... |
| 3 | 6ml8 | - | https://www.nature.com/articles/s42003-023-04793-3 | Structural insights into the broad protection against H1 influenza viruses by a computationally optimized hemagglutinin vaccine | 2023 | JV Dzimianski, J Han, GA Sautto, SM O'Rourke- Communications, 2023 - nature.com | a Closeup of Asn127 of COBRA P1 overlayed with structures of CA/04/09 ( PDB 3LZG) and DV/1/57 bound to the RBS-targeting antibody C05 ( PDB 6ML8 ). b Biolayer interferometry of |
| 4 | 4gie | - | http://www.pnas.org/content/114/40/10648.short | Actin retrograde flow actively aligns and orients ligand-engaged integrins in focal adhesions | 2017 | V Swaminathan, JM Kalappurakkal- Proceedings of the, 2017 - National Acad Sciences | ... How could transmembrane receptors sense directional force? Cytoskeletal forces are thought to provide an ultrasensitive mechanism for triggering integrin activation by inducing structural transitions between inactive and active integrin conformations (11). ... |
| 5 | 3tcq | - | https://link.springer.com/article/10.1007/s00894-021-04682-8 | Targeting ebola virus VP40 protein through novel inhibitors: exploring the structural and dynamic perspectives on molecular landscapes | 2021 | S Khan, Z Fakhar, A Ahmad- Journal of Molecular Modeling, 2021 - Springer | of novel antiviral drugs. Computational methods. Structural modelling. The X-ray crystallographic structure of VP40 protein ( PDB Code: 3TCQ ) [12] was retrieved from the Protein Data Bank (www.rcsb.org). The structure was prepared |
| 6 | 5vnx | 5jay | https://www.nature.com/articles/s41598-018-32905-1 | Riemerella anatipestifer AS87_RS09170 gene is responsible for biotin synthesis, bacterial morphology and virulence | 2018 | X Ren, X Wang, H Shi, X Zhang, Z Chen, KK Malhi- Scientific reports, 2018 - nature.com | 1DJE [30.2% identity]), Burkholderia multivorans ( PDB accession no. 5VNX [28.6% identity]) and Mycobacterium smegmatis ( PDB accession no. 3WY7 [29.9% identity]) 6). WT Yb2 cells were integral with clear structures , and few were undergoing division |
| 7 | 4dz4 | - | https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0248991 | Structure of the E. coli agmatinase, SPEB | 2021 | I Chitrakar, SF Ahmed, AT Torelli, JB French- Plos one, 2021 - journals.plos.org | The first stage used the default parameters with the structure of Burkholderia thailandensis hypothetical agmatinase ( 4DZ4 ) [34] as To place the ligand in the SPEB active site, the structure of the D. radiodurans agmatinase with bound hexane-1,6-diamine ( PDB code 1WOG |
| 8 | 4kna | - | http://www.jbc.org/content/early/2017/09/18/jbc.M117.801514.short | Mechanisms of recognition of A monomer, oligomer, and fibril by homologous antibodies | 2017 | J Zhao, R Nussinov, B Ma- Journal of Biological Chemistry, 2017 - ASBMB | ... To get structural insight into A recognition by crenezumab, we compare the ... Two possible conformers of the apo form of the crenezumab Fab structure were modeled based on the crystal structures of CreneFab apo ( pdb code: 5kmv) and CreneFab-A ( pdb code: 5kna ... |
| 9 | 5vxt | - | https://www.cell.com/cell-reports/fulltext/S2211-1247(24)01353-6 | Biochemical and structural characterization of enzymes in the 4-hydroxybenzoate catabolic pathway of lignin-degrading white-rot fungi | 2024 | E Kuatsjah, A Schwartz, M Zahn, K Tornesakis- Cell Reports, 2024 - cell.com | Another close structural homolog is a catechol 1,2-dioxygenase from the bacterium Burkholderia ambifaria with bound catechol ( PDB : 5VXT ) with 25% sequence identity with the fungal |
| 10 | 4ol9 | - | https://www.sciencedirect.com/science/article/pii/S0304416519301382 | Genome-wide survey and crystallographic analysis suggests a role for both horizontal gene transfer and duplication in pantothenate biosynthesis pathways | 2019 | B Khanppnavar, R Chatterjee, GB Choudhury- et Biophysica Acta (BBA, 2019 - Elsevier | helix in the N-terminal domain (H2, residues 3341) which is typically absent in other well-characterized KPRs such as Escherichia coli (1KS9), S. aureus (4YCA), and M. tuberculosis ( 4OL9 ) (C) Cartoon representation of crystal structure of PaKPR in PDB accession, 5ZIK, 5ZIX |