We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 4HR2 | 2012 | 3 |
| 3R6O | 2011 | 3 |
| 3OC9 | 2010 | 3 |
| 6MAZ | 2019 | 3 |
| 3I4T | 2009 | 3 |
| 3R9P | 2011 | 3 |
| 4G67 | 2012 | 3 |
| 3ILY | 2009 | 3 |
| 6CW5 | 2018 | 3 |
| 4FI5 | 2012 | 3 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3p96 | - | http://onlinelibrary.wiley.com/doi/10.1002/prot.24238/full | Identification of a novel ligand binding site in phosphoserine phosphatase from the hyperthermophilic archaeon Thermococcus onnurineus | 2013 | TY Jung, YS Kim, BH Oh, E Woo - Proteins: Structure, Function, and Bioinformatics, 2013 - Wiley Online Library | ... Flexible movement between the open structure (PDB ID: 1L8L, 1RKV, 2FEA, and 3M1Y), colored in bright orange, and closed structures (PDB ID: 1F5S, 1L7M, 1J97, 1L7P, 3P96, and 3KD3), colored in bluewhite, were analyzed by the program DynDom. ... |
| 2 | 3krs | - | http://onlinelibrary.wiley.com/doi/10.1002/prot.24001/full | Asparagine and glutamine differ in their propensities to form specific side chain-backbone hydrogen bonded motifs in proteins | 2012 | PG Vasudev, M Banerjee? - Proteins: Structure, Function, and Bioinformatics, 2012 - Wiley Online Library | ... acts as the hydrogen bond acceptor. In the available data set of 24 TIM crystal structures, there are three examples with Asn at 119, all of which (PDB IDs:1O5X, 3KRS, 1AW1) exhibit similar motifs. Interestingly, three examples with Gln at position 119 illustrated in ... |
| 3 | 5vvw | - | https://www.sciencedirect.com/science/article/pii/S0024320520312194 | Comparative modeling and dynamic simulation of UDP-N-acetylmuramoyl-alanine ligase (MurC) from Mycobacterium tuberculosis through virtual screening | 2020 | MA Isa- Life Sciences, 2020 - Elsevier | The reference sequence (query sequence), searched against PDB and six proteins (1GQQ, 4HV4, 1P31, 2F00, 5VVW and 1J6U of its entire amino acids were in the most favorable region(Table 1). The G-factor of both the model of MurC, minimized model structure and the |
| 4 | 3gwc | - | https://pubs.acs.org/doi/abs/10.1021/acsomega.0c01224 | dUMP/F-dUMP Binding to Thymidylate Synthase: Human Versus Mycobacterium tuberculosis | 2020 | K Gaurav, T Adhikary, P Satpati- ACS omega, 2020 - ACS Publications | Thymidylate synthase is an enzyme that catalyzes deoxythymidine monophosphate (dTMP) synthesis from substrate deoxyuridine monophosphate (dUMP). Thymidylate synthase of Mycobacterium tuberculosis (... (a) X-ray structure of MtbThyX (homotetramer; monomeric units are in yellow, cyan, green and purple, PDB 3GWC(16)). Each ligand-binding site (out of four) is at the intersection of three monomeric units. |
| 5 | 4xwi | - | https://www.tandfonline.com/doi/abs/10.1080/14756366.2020.1751150 | A study of Rose Bengal against a 2-keto-3-deoxy-d-manno-octulosonate cytidylyltransferase as an antibiotic candidate | 2020 | S Kim, S Jo, MS Kim, DH Shin- Journal of enzyme inhibition and, 2020 - Taylor & Francis | The atomic coordinates of the crystal structure of PaKdsB ( PDB ID: 4XWI ) were saved from the Protein Data Bank and prepared by The crystal structure of PaKdsB deposited in the Protein Data Bank was retrieved and docked with Rose Bengal to predict its binding mode |
| 6 | 4xfd | - | https://www.tandfonline.com/doi/abs/10.1080/07391102.2018.1552199 | Validation of NAD synthase inhibitors for inhibiting the cell viability of Leishmania donovani: In silico and in vitro approach | 2019 | H Mandal, S Vijayakumar, S Yadav- Structure and, 2019 - Taylor & Francis | Skip to Main Content |
| 7 | 5eqz | - | https://hal.archives-ouvertes.fr/hal-01628162/ | Iterative Decomposition Guided Variable Neighborhood Search for Graphical Model Energy Minimization | 2017 | A Ouali, D Allouche, S De Givry- on Uncertainty in, 2017 - hal.archives-ouvertes.fr | Variable Neighborhood Search (VNS) (Mladenovic and Hansen, 1997) is a metaheuristic that uses a finite set of pre-selected neighborhood structures Nk,k = 1, 2, ..., kmax to escape from local minima by system- atically changing the neighborhood structure if the cur- rent one |
| 8 | 3p96 | 3km3, 3k9g | http://scripts.iucr.org/cgi-bin/paper?ba5235 | Can I solve my structure by SAD phasing? Planning an experiment, scaling data and evaluating the useful anomalous correlation and anomalous signal | 2016 | TC Terwilliger, G Bunkczi, LW Hung - Section D: Structural , 2016 - scripts.iucr.org | ... Journal logo, STRUCTURAL BIOLOGY. ... 49-93.] ) that accounts for over 70% of depositions of experimentally phased structures in the Protein Data Bank (PDB; Berman et ... requires a specific element to be present at a limited number of sites in the macromolecular structure and the ... |
| 9 | 3dms | - | https://bmcbioinformatics.biomedcentral.com/articles/10.1186/1471-2105-13-S17-S2 | Functional relevance of dynamic properties of Dimeric NADP-dependent Isocitrate Dehydrogenases | 2012 | R Vinekar, C Verma, I Ghosh - BMC , 2012 - bmcbioinformatics.biomedcentral. | ... The current study therefore concentrates mainly on dimeric NADP-dependent IDHs from subfamilies I and II and additionally subfamily IV (Table 1), with an emphasis on regulation in dimeric M.tb IDH. Burcholderi apseudomallei BpIDH Q63WJ4_BURPS 3DMS. ... |
| 10 | 3kre | - | http://pubs.acs.org/doi/abs/10.1021/ci400306m | Molecular dynamics perspective on the protein thermal stability: A case study using SAICAR synthetase | 2013 | K Manjunath, K Sekar - Journal of chemical information and modeling, 2013 - ACS Publications | ... PDB. The structure of SAICAR synthetase from E. coli (PDB-id: 2gqr), E. chaffeensis (PDB-id: 3kre), G. kaustophilus (PDB- id: 2ywv), M. jannaschii (PDB-id: 2z02) and P. horikoshii (PDB-id: 3u55) were considered for simulation ... |