We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 4OA8 | 2014 | 3 |
| 4WD2 | 2014 | 3 |
| 4PY3 | 2015 | 3 |
| 4LVU | 2013 | 3 |
| 6UYH | 2019 | 3 |
| 4Z9N | 2015 | 3 |
| 4TV4 | 2014 | 3 |
| 5KOI | 2016 | 3 |
| 5T8T | 2016 | 3 |
| 7STZ | 2022 | 3 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3l56 | - | http://www.hindawi.com/journals/irt/2013/645348/abs/ | 3D Molecular Modelling Study of the H7N9 RNA-Dependent RNA Polymerase as an Emerging Pharmacological Target | 2013 | D Vlachakis, A Karozou, S Kossida - Influenza research and treatment, 2013 - hindawi.com | ... The sequence alignment and the blastp query that followed revealed that the PA domain was available in the PDB databank. ... entry: 4ENF), and the crystal structure of the large C-terminal domain of the polymerase basic protein 2 from influenza A virus (RCSB entry: 3L56). ... |
| 2 | 4dz6 | - | https://www.degruyter.com/view/j/pac.2017.89.issue-5/pac-2016-0202/pac-2016-0202... | How to name atoms in phosphates, polyphosphates, their derivatives and mimics, and transition state analogues for enzyme-catalysed phosphoryl transfer reactions ( | 2017 | GM Blackburn, J Cherfils, GP Moss - Pure and Applied , 2017 - degruyter.com | ... For the nucleoside-diphosphate kinase from B. burgdorferi, a vanadate transition state complex links ADP and His 134 as axial ligands (PDB entry 4DZ6). There is no catalytic metal to coordinate the three equatorial oxygen atoms. ... |
| 3 | 3s6o | - | http://scripts.iucr.org/cgi-bin/paper?rr5032 | Structure determination through homology modelling and torsion-angle simulated annealing: application to a polysaccharide deacetylase from Bacillus cereus | 2013 | VE Fadouloglou, M Kapanidou? - Acta Crystallographica Section D Biological Crystallography, 2013 - scripts.iucr.org | ... These included PDB entries 1ny1 , 1w17 , 1w1a , 2c1g , 2cc0 , 2j13 , 3n2q , 3rxz , 3s6o and models produced by MODELLER as obtained through the ModBase database (Fiser & Sali, 2003 [Fiser, A. & Sali, A. (2003). Methods Enzymol. ... |
| 4 | 3ftp | - | http://pubs.acs.org/doi/abs/10.1021/bi3015554 | Discovery of an L-Fucono-1, 5-Lactonase from cog3618 of the Amidohydrolase Superfamily | 2012 | ME Hobbs, MW Vetting, HJ Williams? - Biochemistry, 2013 - ACS Publications | ... monomeric ensemble model generated by an overlay of the structures represented by PDB IDs Page 10 of 56 ACS Paragon Plus Environment ... Initial phases for unliganded BmulJ_04919 were determined by MR using MOLREP and a tetrameric search model (3FTP) (22). ... |
| 5 | 3fvb | - | http://dx.plos.org/10.1371/journal.pone.0068421 | Factors Controlling the Redox Potential of ZnCe6 in an Engineered Bacterioferritin Photochemical 'Reaction Centre' | 2013 | A Mahboob, S Vassiliev, PK Poddutoori, A van der Est? - PloS one, 2013 - dx.plos.org | ... In addition, this aminoacid is conserved among ferritins from several organisms (PDB ID: 2FKZ, 3E1M, 3IS8, 3FVB) suggesting that it serves to regulate heme potential. Replacing it with an aliphatic residue is expected to eliminate this negative effect. ... |
| 6 | 4ege | - | https://link.springer.com/article/10.1007/s12033-018-0097-0 | Trichomonas vaginalis metalloproteinase TvMP50 is a monomeric Aminopeptidase P-like enzyme | 2018 | R Arreola, JL Villalpando, J Puente-Rivera- Molecular, 2018 - Springer | Superposition with E. coli Prolidase Structure ( PDB : 4QR8) 4EGE and 4QR8 are dimers but 4EGE contains a CRE_N domain in the N-terminal determined N-terminal domain; however, as we showed in this study, this domain maintains a closely related architecture with AMP_N |
| 7 | 4xgi | - | https://link.springer.com/content/pdf/10.1007/s10989-019-09886-4.pdf | Homology Modeling and Molecular Docking Studies of Glutamate Dehydrogenase (GDH) from Cyanobacterium Synechocystis sp. PCC 6803 | 2019 | O Haghighi, S Davaeifar, HS Zahiri, H Maleki- International Journal of, 2019 - Springer | aLigand name in structure : NAD-507 Docking pose number Reference ligand in crystallography structure (ligand name and pdb code) NADH NADPH AKG Glutamate 1V9L 1HWYa 5GUD 5IJZ 1HWY 4XGI 6DHM 3AOG Pose 01 4.57 3.48 5.74 5.75 2.22 2.11 1.72 1.58 |
| 8 | 3d53 | 3ome | http://pubs.rsc.org/en/content/articlehtml/2012/mt/c2mt20010d | Identification of two-histidines one-carboxylate binding motifs in proteins amenable to facial coordination to metals | 2012 | M Schmid, G Collet, P Cuniasse, F Gilardoni? - Metallomics, 2012 - pubs.rsc.org | ... 60% sequence similarity are indicated by a * PDB code, Annotated protein function, Carboxylate, Histidine 1, Histidine 2. ... Aminocarboxypropyl-transferase, Glu86*, His193*, His195*. 3D53, Pyrophosphatase, Asp114*, His76*, His77*. ... |
| 9 | 3py6 | - | http://www.sciencedirect.com/science/article/pii/S0010482513003661 | Computational analysis of N-H...PI interactions and its impact on the structural stability of beta-lactamases | 2014 | P Lavanya, S Ramaiah, A Anbarasu - Computers in Biology and Medicine, 2014 - Elsevier | ... Three dimensional structures of ?-lactamases were retrieved from Protein Data Bank (PDB) [26]. ... The PDB codes of selected 67 ?-lactamases in the dataset are as follows: ... A, 3IF6-A, 3L6N-A, 3LVZ-A, 3LY3-A, 3M2K-A, 3OPL-A, 3OZH-A, 3P09-A, 3PAE-A, 3PG4-A, 3PY6-A, 3QI0-A ... |
| 10 | 4ed9 | - | http://link.springer.com/article/10.1007/s10545-013-9632-0 | C7orf10 encodes succinate-hydroxymethylglutarate CoA-transferase, the enzyme that converts glutarate to glutaryl-CoA | 2014 | S Marlaire, E Van Schaftingen… - Journal of inherited …, 2014 - Springer | ... Electrophoresis was performed with ≈50 μg protein for the Coomassie Blue stained gel and ≈5 μg (soluble proteins) or ≈1 ... The closest homologue of human C7orf10 for which a structure is available (4ED9) shares more than 40 % se- quence identity with the mammalian ... |