We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 4WEC | 2014 | 3 |
| 5JI5 | 2016 | 3 |
| 4FKY | 2012 | 3 |
| 4TU1 | 2014 | 3 |
| 4WD2 | 2014 | 3 |
| 5EZ3 | 2015 | 3 |
| 6UYH | 2019 | 3 |
| 4OA8 | 2014 | 3 |
| 6CNZ | 2018 | 3 |
| 4FN2 | 2012 | 3 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3s6d | - | http://www.pnas.org/content/early/2018/01/25/1711837115.short | Method to generate highly stable D-amino acid analogs of bioactive helical peptides using a mirror image of the entire PDB | 2018 | M Garton, S Nim, TA Stone, KE Wang- Proceedings of the, 2018 - National Acad Sciences | Physiology; Plant Biology; Population Biology; Psychological and Cognitive Sciences; Sustainability Science; Systems Biology. Method to generate highly stable D-amino acid analogs of bioactive helical peptides using a mirror image of the entire PDB |
| 2 | 4ege | - | https://link.springer.com/article/10.1007/s12033-018-0097-0 | Trichomonas vaginalis metalloproteinase TvMP50 is a monomeric Aminopeptidase P-like enzyme | 2018 | R Arreola, JL Villalpando, J Puente-Rivera- Molecular, 2018 - Springer | Superposition with E. coli Prolidase Structure ( PDB : 4QR8) 4EGE and 4QR8 are dimers but 4EGE contains a CRE_N domain in the N-terminal determined N-terminal domain; however, as we showed in this study, this domain maintains a closely related architecture with AMP_N |
| 3 | 3ixc | - | https://www.frontiersin.org/articles/10.3389/fmicb.2020.00742/full?report=reader | Crystal structure and active site engineering of a halophilic -carbonic anhydrase | 2020 | M Vogler, R Karan, D Renn, A Vancea- Frontiers in, 2020 - frontiersin.org | (C) The surface potential of CA_D compared to mesophilic -CA homologs (Escherichia coli, 3tio; Salmonella enterica, 3r3r; Anaplasma phagocytophilum, 3ixc ; Bacillus cereus, 1xhd (A) CA_D (crystal structure ), (B) Cam (crystal structure ) from M. thermophila ( PDB ID: 1qrg |
| 4 | 3i0p | - | https://link.springer.com/article/10.1007/s00239-018-9884-2 | Gene encoding a novel enzyme of LDH2/MDH2 family is lost in plant and animal genomes during transition to land | 2019 | LV Puzakova, MV Puzakov, AA Soldatov- Journal of molecular evolution, 2019 - Springer | Prediction of structure and properties of the discov- ered enzyme identified the highest homology to 3I0P pro- tein (P Although tertiary struc- ture of 3I0P protein (malate dehydrogenase from Entamoeba histolytica, https ://doi.org/10.2210/pdb3i 0p/ pdb ) and 1V9N |
| 5 | 3l56 | - | http://www.hindawi.com/journals/irt/2013/645348/abs/ | 3D Molecular Modelling Study of the H7N9 RNA-Dependent RNA Polymerase as an Emerging Pharmacological Target | 2013 | D Vlachakis, A Karozou, S Kossida - Influenza research and treatment, 2013 - hindawi.com | ... The sequence alignment and the blastp query that followed revealed that the PA domain was available in the PDB databank. ... entry: 4ENF), and the crystal structure of the large C-terminal domain of the polymerase basic protein 2 from influenza A virus (RCSB entry: 3L56). ... |
| 6 | 3ftp | - | http://pubs.acs.org/doi/abs/10.1021/bi3015554 | Discovery of an L-Fucono-1, 5-Lactonase from cog3618 of the Amidohydrolase Superfamily | 2012 | ME Hobbs, MW Vetting, HJ Williams? - Biochemistry, 2013 - ACS Publications | ... monomeric ensemble model generated by an overlay of the structures represented by PDB IDs Page 10 of 56 ACS Paragon Plus Environment ... Initial phases for unliganded BmulJ_04919 were determined by MR using MOLREP and a tetrameric search model (3FTP) (22). ... |
| 7 | 4dz6 | - | https://www.degruyter.com/view/j/pac.2017.89.issue-5/pac-2016-0202/pac-2016-0202... | How to name atoms in phosphates, polyphosphates, their derivatives and mimics, and transition state analogues for enzyme-catalysed phosphoryl transfer reactions ( | 2017 | GM Blackburn, J Cherfils, GP Moss - Pure and Applied , 2017 - degruyter.com | ... For the nucleoside-diphosphate kinase from B. burgdorferi, a vanadate transition state complex links ADP and His 134 as axial ligands (PDB entry 4DZ6). There is no catalytic metal to coordinate the three equatorial oxygen atoms. ... |
| 8 | 3s6o | - | http://scripts.iucr.org/cgi-bin/paper?rr5032 | Structure determination through homology modelling and torsion-angle simulated annealing: application to a polysaccharide deacetylase from Bacillus cereus | 2013 | VE Fadouloglou, M Kapanidou? - Acta Crystallographica Section D Biological Crystallography, 2013 - scripts.iucr.org | ... These included PDB entries 1ny1 , 1w17 , 1w1a , 2c1g , 2cc0 , 2j13 , 3n2q , 3rxz , 3s6o and models produced by MODELLER as obtained through the ModBase database (Fiser & Sali, 2003 [Fiser, A. & Sali, A. (2003). Methods Enzymol. ... |
| 9 | 3fvb | - | http://dx.plos.org/10.1371/journal.pone.0068421 | Factors Controlling the Redox Potential of ZnCe6 in an Engineered Bacterioferritin Photochemical 'Reaction Centre' | 2013 | A Mahboob, S Vassiliev, PK Poddutoori, A van der Est? - PloS one, 2013 - dx.plos.org | ... In addition, this aminoacid is conserved among ferritins from several organisms (PDB ID: 2FKZ, 3E1M, 3IS8, 3FVB) suggesting that it serves to regulate heme potential. Replacing it with an aliphatic residue is expected to eliminate this negative effect. ... |
| 10 | 4ed9 | - | http://link.springer.com/article/10.1007/s10545-013-9632-0 | C7orf10 encodes succinate-hydroxymethylglutarate CoA-transferase, the enzyme that converts glutarate to glutaryl-CoA | 2014 | S Marlaire, E Van Schaftingen… - Journal of inherited …, 2014 - Springer | ... Electrophoresis was performed with ≈50 μg protein for the Coomassie Blue stained gel and ≈5 μg (soluble proteins) or ≈1 ... The closest homologue of human C7orf10 for which a structure is available (4ED9) shares more than 40 % se- quence identity with the mammalian ... |