We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 8DUY | 2022 | 3 |
| 5VP5 | 2017 | 3 |
| 3R0O | 2011 | 3 |
| 3TL3 | 2011 | 3 |
| 3TK8 | 2011 | 3 |
| 4WNY | 2014 | 3 |
| 2MJ3 | 2014 | 3 |
| 5DLE | 2015 | 3 |
| 4MPQ | 2013 | 3 |
| 4DZ3 | 2012 | 3 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 4ed9 | - | http://link.springer.com/article/10.1007/s10545-013-9632-0 | C7orf10 encodes succinate-hydroxymethylglutarate CoA-transferase, the enzyme that converts glutarate to glutaryl-CoA | 2014 | S Marlaire, E Van Schaftingen… - Journal of inherited …, 2014 - Springer | ... Electrophoresis was performed with ≈50 μg protein for the Coomassie Blue stained gel and ≈5 μg (soluble proteins) or ≈1 ... The closest homologue of human C7orf10 for which a structure is available (4ED9) shares more than 40 % se- quence identity with the mammalian ... |
| 2 | 4lgv | - | https://www.mdpi.com/1422-0067/20/21/5279 | Molecular Cloning and Exploration of the Biochemical and Functional Analysis of Recombinant Glucose-6-Phosphate Dehydrogenase from Gluconoacetobacter | 2019 | EJ Ramrez-Nava, D Ortega-Cuellar- International journal of, 2019 - mdpi.com | Keywords: glucose 6 phosphate dehydrogenase (G6PD); bioinformatics analysis; kinetic parameters; thermal stability; three-dimensional structure Finally, using homologous 3D structures , we modeled the G6PD protein, which suggests the structural and functional |
| 3 | 4xgi | - | https://link.springer.com/content/pdf/10.1007/s10989-019-09886-4.pdf | Homology Modeling and Molecular Docking Studies of Glutamate Dehydrogenase (GDH) from Cyanobacterium Synechocystis sp. PCC 6803 | 2019 | O Haghighi, S Davaeifar, HS Zahiri, H Maleki- International Journal of, 2019 - Springer | aLigand name in structure : NAD-507 Docking pose number Reference ligand in crystallography structure (ligand name and pdb code) NADH NADPH AKG Glutamate 1V9L 1HWYa 5GUD 5IJZ 1HWY 4XGI 6DHM 3AOG Pose 01 4.57 3.48 5.74 5.75 2.22 2.11 1.72 1.58 |
| 4 | 4ix8 | - | https://link.springer.com/protocol/10.1007/978-1-0716-1036-7_12 | Mustguseal and Sister Web-Methods: A Practical Guide to Bioinformatic Analysis of Protein Superfamilies | 2021 | D Suplatov, Y Sharapova, V vedas- Multiple Sequence Alignment, 2021 - Springer | etc.): 3WGB, 2W7E, 3A2B, 1IBJ, 1LKC, 1 V72, 2BKW, 2EZ2, 4IX8 , 1QZ9, 4BA5 The missing loop regions in these PDB structures were reconstructed using the MODELLER software [23] enzymes, the MATT algorithm was used to prepare the initial 3D- structure superimposition of -- This is not a duplicate of their earlier 2018 work |
| 5 | 4dz6 | - | https://www.degruyter.com/view/j/pac.2017.89.issue-5/pac-2016-0202/pac-2016-0202... | How to name atoms in phosphates, polyphosphates, their derivatives and mimics, and transition state analogues for enzyme-catalysed phosphoryl transfer reactions ( | 2017 | GM Blackburn, J Cherfils, GP Moss - Pure and Applied , 2017 - degruyter.com | ... For the nucleoside-diphosphate kinase from B. burgdorferi, a vanadate transition state complex links ADP and His 134 as axial ligands (PDB entry 4DZ6). There is no catalytic metal to coordinate the three equatorial oxygen atoms. ... |
| 6 | 3i0p | - | https://link.springer.com/article/10.1007/s00239-018-9884-2 | Gene encoding a novel enzyme of LDH2/MDH2 family is lost in plant and animal genomes during transition to land | 2019 | LV Puzakova, MV Puzakov, AA Soldatov- Journal of molecular evolution, 2019 - Springer | Prediction of structure and properties of the discov- ered enzyme identified the highest homology to 3I0P pro- tein (P Although tertiary struc- ture of 3I0P protein (malate dehydrogenase from Entamoeba histolytica, https ://doi.org/10.2210/pdb3i 0p/ pdb ) and 1V9N |
| 7 | 3ftp | - | http://pubs.acs.org/doi/abs/10.1021/bi3015554 | Discovery of an L-Fucono-1, 5-Lactonase from cog3618 of the Amidohydrolase Superfamily | 2012 | ME Hobbs, MW Vetting, HJ Williams? - Biochemistry, 2013 - ACS Publications | ... monomeric ensemble model generated by an overlay of the structures represented by PDB IDs Page 10 of 56 ACS Paragon Plus Environment ... Initial phases for unliganded BmulJ_04919 were determined by MR using MOLREP and a tetrameric search model (3FTP) (22). ... |
| 8 | 5vvw | - | https://www.sciencedirect.com/science/article/pii/S0024320520312194 | Comparative modeling and dynamic simulation of UDP-N-acetylmuramoyl-alanine ligase (MurC) from Mycobacterium tuberculosis through virtual screening | 2020 | MA Isa- Life Sciences, 2020 - Elsevier | The reference sequence (query sequence), searched against PDB and six proteins (1GQQ, 4HV4, 1P31, 2F00, 5VVW and 1J6U of its entire amino acids were in the most favorable region(Table 1). The G-factor of both the model of MurC, minimized model structure and the |
| 9 | 3r2v | - | https://www.sciencedirect.com/science/article/pii/B9780323857307000266 | Antimicrobial (viral, bacterial, fungal, and parasitic) mechanisms of action of boron-containing compounds | 2023 | ED Farfn-Garca, A Kilic, J Garca-Machorro- Viral, Parasitic, Bacterial, 2023 - Elsevier | in a complex on the polymerase basic protein 2 of the influenza virus ( PDB code: 3R2V ). in the Protein Data Bank ( PDB ). The obtained crystal structures allow the analysis of BCC with |
| 10 | 6wgy | 3hwk | https://www.sciencedirect.com/science/article/pii/S0141813021009077 | Structural basis of the cooperative activation of type II citrate synthase (HyCS) from Hymenobacter sp. PAMC 26554 | 2021 | SH Park, CW Lee, DW Bae, H Do, CS Jeong- International Journal of, 2021 - Elsevier | of citrate-bound HyCS (closed conformation) and apo-EcCS (open conformation, PDB code: 4G6B residues showed a face-to-edge interaction in the open state structure of EcCS citrate binding-induced conformational changes result in the transfer of further structural changes to ... Mycobacterium tuberculosis (PDB code 3HWK), has a Lys residue at the position corresponding to Trp262 of HyCS but that from the Mycobacterium tuberculosis variant bovis AF2122/97 (PDB code 6WGY) contains a Ser residue instead |