We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 5VP5 | 2017 | 3 |
| 2MJ3 | 2014 | 3 |
| 5J49 | 2016 | 3 |
| 4MPQ | 2013 | 3 |
| 5VNX | 2017 | 3 |
| 7M5E | 2021 | 3 |
| 3KNU | 2009 | 3 |
| 4M9A | 2013 | 3 |
| 3S99 | 2011 | 3 |
| 4WNY | 2014 | 3 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3i0p | - | https://link.springer.com/article/10.1007/s00239-018-9884-2 | Gene encoding a novel enzyme of LDH2/MDH2 family is lost in plant and animal genomes during transition to land | 2019 | LV Puzakova, MV Puzakov, AA Soldatov- Journal of molecular evolution, 2019 - Springer | Prediction of structure and properties of the discov- ered enzyme identified the highest homology to 3I0P pro- tein (P Although tertiary struc- ture of 3I0P protein (malate dehydrogenase from Entamoeba histolytica, https ://doi.org/10.2210/pdb3i 0p/ pdb ) and 1V9N |
| 2 | 4wgj | 4lu4, 4py3, 4xi8 | https://royalsocietypublishing.org/doi/abs/10.1098/rsob.210009 | Fic and non-Fic AMPylases: protein AMPylation in metazoans | 2021 | BK Chatterjee, MC Truttmann- Open Biology, 2021 - royalsocietypublishing.org | name, organism name, references, function/targets, structure ( PDB ID) BepC, Bartonella henselae, [59], triggers actin stress fibre formation in HeLa cells, 4WGJ salt bridges occur between (a) Asp117 and Lys119 of the extended flap region (a -hairpin like structure that partially |
| 3 | 4xgi | - | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7326016/ | Structural studies of glutamate dehydrogenase (isoform 1) from Arabidopsis thaliana, an important enzyme at the branch-point between carbon and nitrogen | 2020 | M Grzechowiak, J Sliwiak, M Jaskolski- Frontiers in Plant, 2020 - ncbi.nlm.nih.gov | vertebrate, and fungal GDHs have been deposited in the Protein Data Bank ( PDB ) In the present study, we report the crystal structure of AtGDH1 in apo form, as To provide background for functional and structural discussions, we investigated the evolutionary divergence of the |
| 4 | 3r2v | - | https://www.sciencedirect.com/science/article/pii/B9780323857307000266 | Antimicrobial (viral, bacterial, fungal, and parasitic) mechanisms of action of boron-containing compounds | 2023 | ED Farfn-Garca, A Kilic, J Garca-Machorro- Viral, Parasitic, Bacterial, 2023 - Elsevier | in a complex on the polymerase basic protein 2 of the influenza virus ( PDB code: 3R2V ). in the Protein Data Bank ( PDB ). The obtained crystal structures allow the analysis of BCC with |
| 5 | 5vvw | - | https://www.sciencedirect.com/science/article/pii/S0024320520312194 | Comparative modeling and dynamic simulation of UDP-N-acetylmuramoyl-alanine ligase (MurC) from Mycobacterium tuberculosis through virtual screening | 2020 | MA Isa- Life Sciences, 2020 - Elsevier | The reference sequence (query sequence), searched against PDB and six proteins (1GQQ, 4HV4, 1P31, 2F00, 5VVW and 1J6U of its entire amino acids were in the most favorable region(Table 1). The G-factor of both the model of MurC, minimized model structure and the |
| 6 | 3d53 | 3ome | http://pubs.rsc.org/en/content/articlehtml/2012/mt/c2mt20010d | Identification of two-histidines one-carboxylate binding motifs in proteins amenable to facial coordination to metals | 2012 | M Schmid, G Collet, P Cuniasse, F Gilardoni? - Metallomics, 2012 - pubs.rsc.org | ... 60% sequence similarity are indicated by a * PDB code, Annotated protein function, Carboxylate, Histidine 1, Histidine 2. ... Aminocarboxypropyl-transferase, Glu86*, His193*, His195*. 3D53, Pyrophosphatase, Asp114*, His76*, His77*. ... |
| 7 | 4jv3 | 4f32 | https://pubs.acs.org/doi/abs/10.1021/acsmedchemlett.0c00653 | Semisynthesis and Biological Evaluation of Platencin Thioether Derivatives: Dual FabF and FabH Inhibitors against MRSA | 2021 | Y Li, X Weng, Y Deng, J Pan, S Zhu- ACS medicinal, 2021 - ACS Publications | The discovery and clinical use of multitarget monotherapeutic antibiotics is regarded as a promising approach to reduce the development of antibiotic resistance. Platencin (PTN), a potent natural a... On the basis of the X-ray structures of PTN with ecFabF(C163Q), Burkholderia vietnamiensis FabF, and Brucella melitensis FabB (PDB IDs 3HO2, 4F32, and 4JV3, respectively) as well as that of platencin A1 with ecFabF-(C163Q) (PDB ID 3HO9), it is likely that these PTN derivatives may also interact with FabF or |
| 8 | 4egq | 4eg0, 4egj | https://febs.onlinelibrary.wiley.com/doi/abs/10.1111/febs.14976 | Burkholderiapseudomallei dalaninedalanine ligase; detailed characterisation and assessment of a potential antibiotic drug target | 2019 | L DazSez, LS Torrie, SP McElroy, D Gray- The FEBS, 2019 - Wiley Online Library | An apo-BpDdl structure ( PDB code 4EGQ ) has been determined by the Seattle Structural Genomics Center for Infectious Disease. Electron and difference density maps in the ATP binding sites were inspected to ascertain if a ligand might be present |
| 9 | 3krs | - | http://www.sciencedirect.com/science/article/pii/S1093326310001981 | Stability tests on known and misfolded structures with discrete and all atom molecular dynamics simulations | 2011 | S Yun, HR Guy - Journal of Molecular Graphics and Modelling, 2011 - Elsevier | ... patterns and high resolution (less than 2.0 ? resolution) were selected for this study: a human serum retinol-binding protein (RBP with PDB ID 1JYD) [24], a regulator of G-protein signaling (RGS4 with PDB ID 1EZT) [25], and triosephosphate isomerase (TIM with PDB ID 3KRS). ... |
| 10 | 6q04 | 6VXX | https://www.researchsquare.com/article/rs-37300/latest.pdf | N-terminal domain (NTD) of SARS-CoV-2 spike-protein structurally resembles MERS-CoV NTD sialoside-binding pocket | 2020 | M Awasthi, S Gulati, DP Sarkar, S Tiwari, S Kateriya - 2020 - researchsquare.com | W program [14]. Structure preparation The cryo-EM structures of SARS-CoV-2 ( PDB ID: 6VXX) [8] and MERS-CoV ( PDB ID: 6Q04 ) [10] spike spike glycoprotein (YP_009724390. 1) was strongly biased on the crystal structure of SARS-CoV-2, while |