We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 3UE9 | 2011 | 3 |
| 7SKZ | 2022 | 3 |
| 4EGF | 2012 | 3 |
| 4LHR | 2013 | 3 |
| 7KVY | 2020 | 3 |
| 4DYW | 2012 | 3 |
| 6U94 | 2019 | 3 |
| 4FN2 | 2012 | 3 |
| 7L6C | 2021 | 3 |
| 3VAB | 2012 | 3 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 4odj | - | https://onlinelibrary.wiley.com/doi/abs/10.1002/pro.3545 | CrossStrand Disulfides in the Hydrogen Bonding Site of Antiparallel sheet (aCSDhs): Forbidden Disulfides that are Highly Strained, Easily Broken | 2018 | NL Haworth, MJ Wouters, MO Hunter, L Ma- Protein, 2018 - Wiley Online Library | Examples include interleukin 36 receptor antagonist (PDB: 1md6) and the previously mentioned ML domains. Other aCSDhs span only short segments of sequence straddling a β‐hairpin (PDBs: 5bvw, 3fl7, 1htd, 3ngm, 4odj). |
| 2 | 4f2n | - | https://www.mdpi.com/2223-7747/9/8/983 | Three Alkaloids from an Apocynaceae Species, Aspidosperma spruceanum as Antileishmaniasis Agents by In Silico Demo-case Studies | 2020 | D Morales-Jadn, J Blanco-Salas, T Ruiz-Tllez- Plants, 2020 - mdpi.com | of this method can provide insights into the druggable targetome contained in the structural proteome criteria were chosen (vg to be a starting structure , to have a similar structure of a drawn using Marvin Sketch 19.15 converting the format of some structures into pdb files using ... Table A2. Enzymes crystal structures available in PDB server. 4f2n.1.A target SOD |
| 3 | 3p96 | 3km3, 3k9g | http://scripts.iucr.org/cgi-bin/paper?ba5235 | Can I solve my structure by SAD phasing? Planning an experiment, scaling data and evaluating the useful anomalous correlation and anomalous signal | 2016 | TC Terwilliger, G Bunkczi, LW Hung - Section D: Structural , 2016 - scripts.iucr.org | ... Journal logo, STRUCTURAL BIOLOGY. ... 49-93.] ) that accounts for over 70% of depositions of experimentally phased structures in the Protein Data Bank (PDB; Berman et ... requires a specific element to be present at a limited number of sites in the macromolecular structure and the ... |
| 4 | 6nb3 | 6q04 | https://internal-journal.frontiersin.org/articles/10.3389/fmolb.2021.607443/full | Molecular mechanisms behind anti SARS-CoV-2 action of lactoferrin | 2021 | M Miotto, L Di Rienzo, L B- Frontiers in, 2021 - internal-journal.frontiersin.org | Structural studies determined the structures of such protein both in free form and bound to ACE2 of the ACE2 receptor with SARS-CoV-2 spike receptor-binding domain, RBD ( PDB id: 6m17 ... The 10 structural analogs (as identified by TM-align Zhang and Skolnick (2005)) found by I-tasser are PDB id: 5X58, 6NZK, 6NB3, 3JCL, 5I08, 6CV0, 5SZS, 5WRG , 6UTK, 6B7N. The first (out of five) model returned |
| 5 | 4lgv | - | https://www.mdpi.com/1422-0067/20/21/5279 | Molecular Cloning and Exploration of the Biochemical and Functional Analysis of Recombinant Glucose-6-Phosphate Dehydrogenase from Gluconoacetobacter | 2019 | EJ Ramrez-Nava, D Ortega-Cuellar- International journal of, 2019 - mdpi.com | Keywords: glucose 6 phosphate dehydrogenase (G6PD); bioinformatics analysis; kinetic parameters; thermal stability; three-dimensional structure Finally, using homologous 3D structures , we modeled the G6PD protein, which suggests the structural and functional |
| 6 | 6wgy | 3hwk | https://www.sciencedirect.com/science/article/pii/S0141813021009077 | Structural basis of the cooperative activation of type II citrate synthase (HyCS) from Hymenobacter sp. PAMC 26554 | 2021 | SH Park, CW Lee, DW Bae, H Do, CS Jeong- International Journal of, 2021 - Elsevier | of citrate-bound HyCS (closed conformation) and apo-EcCS (open conformation, PDB code: 4G6B residues showed a face-to-edge interaction in the open state structure of EcCS citrate binding-induced conformational changes result in the transfer of further structural changes to ... Mycobacterium tuberculosis (PDB code 3HWK), has a Lys residue at the position corresponding to Trp262 of HyCS but that from the Mycobacterium tuberculosis variant bovis AF2122/97 (PDB code 6WGY) contains a Ser residue instead |
| 7 | 4wbs | - | https://journals.asm.org/doi/abs/10.1128/JB.00082-21 | Structural modeling of the Treponema pallidum OMPeome: a roadmap for deconvolution of syphilis pathogenesis and development of a syphilis vaccine | 2021 | KL Hawley, JM Montezuma-Rusca- Journal of, 2021 - Am Soc Microbiol | TP0786 Phyre2 LptB; Burkholderia phymatum; 4WBS 50 conserved in T. pallidum BamA, we performed structure -based sequence alignment of the 170 TP0326 3D model with the crystal structures of E. coli BamA ( PDB ID: 5D0Q, 5D0O) (60). The 171 |
| 8 | 3jvi | - | https://link.springer.com/protocol/10.1007/978-1-0716-0163-1_1 | In Silico Laboratory: Tools for Similarity-Based Drug Discovery | 2020 | S Lenik, J Konc- Targeting Enzymes for Pharmaceutical Development, 2020 - Springer | The output file 1phrA_3jviA.0.rota. pdb contains 3jvi's coordinates superimposed onto 1phr according to Information window contains the name, PDB , and UniProt number of the clicked amino acid Sequence variants that could not be mapped to the protein structure are listed |
| 9 | 5bnt | - | https://scripts.iucr.org/cgi-bin/paper?dp5109 | Structure of aspartate -semialdehyde dehydrogenase from Francisella tularensis | 2018 | NJ Mank, S Pote, KA Majorek, AK Arnette- Section F: Structural, 2018 - scripts.iucr.org | entry 3pzr; Pavlovsky et al., 2012), Pseudomonas aeruginosa ( PDB entry 5bnt ; Seattle Structural N-acetyl- -glutamyl-phosphate reductases (ArgCs), including proteins with known structure : ArgCs from entry 2i3a; Cherney et al., 2007), Salmonella typhi- murium ( PDB entry 2g17 |
| 10 | 3iml | 3tde, 3s82, 3rv2 | http://onlinelibrary.wiley.com/doi/10.1111/febs.12784/full | Understanding molecular recognition of promiscuity of thermophilic methionine adenosyltransferase sMAT from Sulfolobus solfataricus | 2014 | F Wang, S Singh, J Zhang, TD Huber - FEBS , 2014 - Wiley Online Library | ... mjMAT Methanococcus jannaschii methionine adenosyltransferase. PDB Protein Data Bank. Pi phosphate. PPi diphosphate. ... To date, MAT structures from Escherichia coli [3, 4], Campylobacter jejuni [5], Burkholderia pseudomallei (PDB code 3IML), Entamoeba histolytica ... |