We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 8DUY | 2022 | 3 |
| 4PBC | 2014 | 3 |
| 5U29 | 2017 | 3 |
| 6MKE | 2018 | 3 |
| 6MYA | 2018 | 3 |
| 4OA8 | 2014 | 3 |
| 4FN2 | 2012 | 3 |
| 4WNY | 2014 | 3 |
| 4WEC | 2014 | 3 |
| 4KZP | 2013 | 3 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 5eqz | - | https://hal.archives-ouvertes.fr/hal-01628162/ | Iterative Decomposition Guided Variable Neighborhood Search for Graphical Model Energy Minimization | 2017 | A Ouali, D Allouche, S De Givry- on Uncertainty in, 2017 - hal.archives-ouvertes.fr | Variable Neighborhood Search (VNS) (Mladenovic and Hansen, 1997) is a metaheuristic that uses a finite set of pre-selected neighborhood structures Nk,k = 1, 2, ..., kmax to escape from local minima by system- atically changing the neighborhood structure if the cur- rent one |
| 2 | 5k0s | - | https://www.jbc.org/article/S0021-9258(21)00446-4/abstract | Molecular basis for diaryldiamine selectivity and competition with tRNA in a type 2 methionyl-tRNA synthetase from a Gram-negative bacterium | 2021 | GF Mercaldi, M de Oliveira Andrade- Journal of Biological, 2021 - ASBMB | In addition, XcMetRS was compared with MetRS1 enzymes in complex with dual-site inhibitors from Trypanosoma brucei (PDB code: 4EGA) (48, 67), Brucella melitensis (PDB code: 5K0S) (35, 68), and S. aureus (PDB code: 4QRD) |
| 3 | 5bnt | - | https://scripts.iucr.org/cgi-bin/paper?dp5109 | Structure of aspartate -semialdehyde dehydrogenase from Francisella tularensis | 2018 | NJ Mank, S Pote, KA Majorek, AK Arnette- Section F: Structural, 2018 - scripts.iucr.org | entry 3pzr; Pavlovsky et al., 2012), Pseudomonas aeruginosa ( PDB entry 5bnt ; Seattle Structural N-acetyl- -glutamyl-phosphate reductases (ArgCs), including proteins with known structure : ArgCs from entry 2i3a; Cherney et al., 2007), Salmonella typhi- murium ( PDB entry 2g17 |
| 4 | 4jv3 | 4f32 | https://pubs.acs.org/doi/abs/10.1021/acsmedchemlett.0c00653 | Semisynthesis and Biological Evaluation of Platencin Thioether Derivatives: Dual FabF and FabH Inhibitors against MRSA | 2021 | Y Li, X Weng, Y Deng, J Pan, S Zhu- ACS medicinal, 2021 - ACS Publications | The discovery and clinical use of multitarget monotherapeutic antibiotics is regarded as a promising approach to reduce the development of antibiotic resistance. Platencin (PTN), a potent natural a... On the basis of the X-ray structures of PTN with ecFabF(C163Q), Burkholderia vietnamiensis FabF, and Brucella melitensis FabB (PDB IDs 3HO2, 4F32, and 4JV3, respectively) as well as that of platencin A1 with ecFabF-(C163Q) (PDB ID 3HO9), it is likely that these PTN derivatives may also interact with FabF or |
| 5 | 2kok | - | http://link.springer.com/article/10.1007/s10142-012-0296-x | A new arsenate reductase involved in arsenic detoxification in Anabaena sp. PCC7120 | 2013 | S Pandey, AK Shrivastava, VK Singh, R Rai… - Functional & integrative …, 2013 - Springer | ... b Structure-based multiple sequence alignment of All0195 homologs. ... 261278552 |
| 6 | 4ege | - | https://link.springer.com/article/10.1007/s12033-018-0097-0 | Trichomonas vaginalis metalloproteinase TvMP50 is a monomeric Aminopeptidase P-like enzyme | 2018 | R Arreola, JL Villalpando, J Puente-Rivera- Molecular, 2018 - Springer | Superposition with E. coli Prolidase Structure ( PDB : 4QR8) 4EGE and 4QR8 are dimers but 4EGE contains a CRE_N domain in the N-terminal determined N-terminal domain; however, as we showed in this study, this domain maintains a closely related architecture with AMP_N |
| 7 | 4noz | 4mh4 | https://pubs.acs.org/doi/abs/10.1021/acscatal.0c01257 | Substrate and product-assisted catalysis: molecular aspects behind structural switches along Organic Hydroperoxide Resistance Protein catalytic cycle | 2020 | R Mateus Domingos, RD Teixeira, A Zeida- ACS, 2020 - ACS Publications | The Ohr active site architecture is composed of two cysteines structures (Figure S1). Notably, when analyzing the other Ohr structures available in the PDB , we observed that the position of the Arg-loop in the Bacillus subtilis OhrB (BsOhrB) structure presents an intermediate |
| 8 | 3d64 | - | http://pubs.acs.org/doi/abs/10.1021/jp3014332 | Hidden Relationship between Conserved Residues and Locally Conserved Phosphate-Binding Structures in NAD (P)-Binding Proteins | 2012 | CY Wu, YH Hwa, YC Chen, C Lim - The Journal of Physical Chemistry, 2012 - ACS Publications | ... Bank (PDB).2 In the absence of structural data, sequence similarity search tools are useful in annotating protein function and in aiding the design of experiments for further studies. ... the NAD(P)-binding domains in the current PDB. ... |
| 9 | 3obk | 3sth, 3ujh | http://www.tandfonline.com/doi/abs/10.1517/17460441.2012.729036 | Screening for small molecule inhibitors of Toxoplasma gondii | 2012 | S Kortagere - Expert opinion on drug discovery, 2012 - Taylor & Francis | ... A screening for protein targets in T. gondii, for which a crystal structure is available and a ...3OBK Crystal structure of delta-aminolevulinic acid dehydratase (porphobilinogen synthase) from T. gondii ME49 in complex with the reaction product porphobilinogenr ... |
| 10 | 4wkw | - | http://www.jbc.org/content/290/52/31077.short | The redox state regulates the conformation of Rv2466c to activate the antitubercular prodrug TP053 | 2015 | D Albesa-Jov, N Comino, M Tersa, E Mohorko - Journal of Biological , 2015 - ASBMB | ...E, schematic representation showing the comparison between the crystal structure of Rv2466c-CT-His and the structural homologue from M. leprae (PDB code 4WKW). The canonical thioredoxin folds are shown in orange. The α-helical subdomains of Rv2466c-CT-His and the M. leprae homologue ... |