We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 3V8H | 2012 | 3 |
| 4LHR | 2013 | 3 |
| 2MRL | 2014 | 3 |
| 3UWR | 2012 | 3 |
| 3I4T | 2009 | 3 |
| 5V0X | 2018 | 3 |
| 5EZ3 | 2015 | 3 |
| 4KZK | 2013 | 3 |
| 3UE9 | 2011 | 3 |
| 3GVF | 2009 | 3 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 5ha4 | - | https://onlinelibrary.wiley.com/doi/abs/10.1002/jmr.2894 | In silico prediction, molecular docking and binding studies of acetaminophen and dexamethasone to Enterococcus faecalis diaminopimelate epimerase | 2021 | H Singh, S Das, J Yadav, VK Srivastava- Journal of Molecular, 2021 - Wiley Online Library | are also available in the PDB , but are to date otherwise unpublished, including Acinetobacter baumannii ( PDB : 5HA4 ), Bacillus anthracis ( PDB : 2OTN structural and functional studies of DAP epimerase from different organisms have reported that the structure consists of |
| 2 | 7so9 | - | https://www.nature.com/articles/s42003-024-07350-8 | The identification of a SARs-CoV2 S2 protein derived peptide with super-antigen-like stimulatory properties on T-cells | 2025 | TH Tu, FE Bennani, N Masroori, C Liu- Communications, 2025 - nature.com | PDB IDs: 2XN9 62 and 4C56 63 were used, 2XN9 and 4C56 were attached with two crystal structures the complex HLA I-TCR, we used the PDB IDs 3PWP 64 . ... PDB IDs of the variants of SARS-CoV 2 used for homology modeling: Alpha_(B.1.1.7) (7R1A), Beta_(B.1.351) (7Q6E), Gamma_(P.1) (7V83), Delta_(B.1.617.2) (7SO9), Omicron_(B.1.529) (7WPA). |
| 3 | 4noz | 4mh4 | https://pubs.acs.org/doi/abs/10.1021/acscatal.0c01257 | Substrate and product-assisted catalysis: molecular aspects behind structural switches along Organic Hydroperoxide Resistance Protein catalytic cycle | 2020 | R Mateus Domingos, RD Teixeira, A Zeida- ACS, 2020 - ACS Publications | The Ohr active site architecture is composed of two cysteines structures (Figure S1). Notably, when analyzing the other Ohr structures available in the PDB , we observed that the position of the Arg-loop in the Bacillus subtilis OhrB (BsOhrB) structure presents an intermediate |
| 4 | 3nrr | 3i3r | http://www.sciencedirect.com/science/article/pii/S0041010115001002 | Homology modeling, vasorelaxant and bradykinin-potentiating activities of a novel hypotensin found in the scorpion venom from Tityus stigmurus | 2015 | RJA Machado, LGM Junior, NKV Monteiro… - Toxicon, 2015 - Elsevier | ... thymidylate synthase from B. bovis with dUMP, Ralitrexed and NADP (PDB ID: 3NRR, ChainA ... Protein Data Bank are listed here in increasing order of identity: X-ray structure dihydrofolatereductase/thymidylate synthase from B. bovis at 2.35 Å resolution (PDB ID: 3I3R ... |
| 5 | 3hhe | 3uw1 | http://www.sciencedirect.com/science/article/pii/S109332631400179X | Structural modeling and docking studies of ribose 5-phosphate isomerase from Leishmania major and Homo sapiens: A comparative analysis for Leishmaniasis … | 2015 | PVSZ Capriles, LPR Baptista, IA Guedes… - Journal of Molecular …, 2015 - Elsevier | ... identity: 42%); (iii) 2F8M [29], the R5PI type A structure from Plasmodium falciparum (identity:35%) and (iv) 3HHE [30], the R5PI type A structure from Bartonella ... The alignment analyses showedthat no PDB sequence was able to align against the 20 C-terminal amino acids ... |
| 6 | 5kak | - | https://books.google.com/books?hl=en&lr=&id=x6RMDwAAQBAJ&oi=fnd&pg=PR8&dq=%225KA... | Protein-protein and domain-domain interactions | 2018 | P Kangueane, C Nilofer - 2018 - books.google.com | 1.10) structures It is important to under- stand the physical and chemical features of amino acids to understand protein folding, structure , function, and 1.4 A covalent bond is illustrated using cysteine with corresponding bond length 1.5 Structural Motifs Proteins are made of |
| 7 | 4dz6 | - | https://www.degruyter.com/view/j/pac.2017.89.issue-5/pac-2016-0202/pac-2016-0202... | How to name atoms in phosphates, polyphosphates, their derivatives and mimics, and transition state analogues for enzyme-catalysed phosphoryl transfer reactions ( | 2017 | GM Blackburn, J Cherfils, GP Moss - Pure and Applied , 2017 - degruyter.com | ... For the nucleoside-diphosphate kinase from B. burgdorferi, a vanadate transition state complex links ADP and His 134 as axial ligands (PDB entry 4DZ6). There is no catalytic metal to coordinate the three equatorial oxygen atoms. ... |
| 8 | 3d64 | - | http://pubs.acs.org/doi/abs/10.1021/jp3014332 | Hidden Relationship between Conserved Residues and Locally Conserved Phosphate-Binding Structures in NAD (P)-Binding Proteins | 2012 | CY Wu, YH Hwa, YC Chen, C Lim - The Journal of Physical Chemistry, 2012 - ACS Publications | ... Bank (PDB).2 In the absence of structural data, sequence similarity search tools are useful in annotating protein function and in aiding the design of experiments for further studies. ... the NAD(P)-binding domains in the current PDB. ... |
| 9 | 2khp | - | https://www.mdpi.com/1420-3049/25/1/147 | Identifying Ortholog Selective Fragment Molecules for Bacterial Glutaredoxins by NMR and Affinity Enhancement by Modification with an Acrylamide Warhead | 2020 | RB Khattri, DL Morris, SM Bilinovich, E Manandhar- Molecules, 2020 - mdpi.com | between the two domains, the presence of multiple paralogs in one or both species, and a lack of conserved genomic architecture between the Structural comparison of hGRX1 to E. coli GRX and BrmGRX indicated similarities in the overall fold and structure ... NMR backbone resonance assignments for BrmGRX (2KHP) and hGRX1 (1JHB) were obtained from the BMRB |
| 10 | 4xgi | - | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7326016/ | Structural studies of glutamate dehydrogenase (isoform 1) from Arabidopsis thaliana, an important enzyme at the branch-point between carbon and nitrogen | 2020 | M Grzechowiak, J Sliwiak, M Jaskolski- Frontiers in Plant, 2020 - ncbi.nlm.nih.gov | vertebrate, and fungal GDHs have been deposited in the Protein Data Bank ( PDB ) In the present study, we report the crystal structure of AtGDH1 in apo form, as To provide background for functional and structural discussions, we investigated the evolutionary divergence of the |