We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 4M16 | 2014 | 2 |
| 7KM8 | 2021 | 2 |
| 4TWR | 2014 | 2 |
| 4LW8 | 2013 | 2 |
| 3KCQ | 2009 | 2 |
| 3D63 | 2008 | 2 |
| 6DLK | 2018 | 2 |
| 6UK3 | 2019 | 2 |
| 3RMI | 2011 | 2 |
| 3SF6 | 2011 | 2 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3tmg | - | http://jb.asm.org/content/197/21/3378.short | Mechanistic insight into trimethylamine N-oxide recognition by the marine bacterium Ruegeria pomeroyi DSS-3 | 2015 | CY Li, XL Chen, X Shao, TD Wei, P Wang - Journal of , 2015 - Am Soc Microbiol | ... The extended loop comprising the metal ion binding site is colored orange. The PDBcode of each structure is shown. ... TmoX, green; 2REG, cyan; 3TMG, magenta; 3L6H, yellow;1R9L, salmon; 3PPP, light blue; 3R6U, slate; 1SW2, orange. ... |
| 2 | 4lc3 | - | https://royalsocietypublishing.org/doi/abs/10.1098/rsob.170248 | Structural and functional studies of Spr1654: an essential aminotransferase in teichoic acid biosynthesis in Streptococcus pneumoniae | 2018 | X Han, R Sun, T Sandalova, A Achour- Open biology, 2018 - royalsocietypublishing.org | The crystal structures of Spr1654 and in complex with PLP and PMP can direct the future rational design of novel therapeutic compounds against S. pneumoniae... The crystal structures were determined by molecular replacement in Phaser [40] using the crystal structure of UDP-4-amino-4-deoxy-l-arabinose-oxoglutarate aminotransferase from Burkholderia cenocepacia (PDB code: 4LC3) as search model. |
| 3 | 5b8i | - | http://www.plantphysiol.org/content/182/2/1142?utm_source=TrendMD&utm_medium=cpc... | Two SnRK2-interacting calcium sensor isoforms negatively regulate SnRK2 activity by different mechanisms | 2020 | K Tarnowski, M Klimecka, A Ciesielski, G Goch- Plant, 2020 - Am Soc Plant Biol | Skip to main content |
| 4 | 3q1t | - | http://www.biomedcentral.com/1471-2105/14/S3/S13/ | Protein function annotation with Structurally Aligned Local Sites of Activity (SALSAs) | 2013 | Z Wang, P Yin, JS Lee, R Parasuram? - BMC Bioinformatics, 2013 - biomedcentral.com | ... A structural genomics protein from Mycobacterium avium (PDB ID 3q1t) has been reported to be an enoyl-CoA hydratase (ECH), but SALSA ... There are currently over 11,000 structural genomics (SG) protein structures in the Protein Data Bank (PDB) [1] and most of them are of ... |
| 5 | 3uve | - | https://www.nature.com/articles/s42003-022-03684-3 | A complete nicotinate degradation pathway in the microbial eukaryote Aspergillus nidulans | 2022 | E Bokor, J mon, M Varga, A Szekeres- Communications, 2022 - nature.com | ( PDB code: 3awd) and carveol dehydrogenase CDH from Mycobacterium avium ( PDB code: 3uve HxnM shows striking structural similarity with its closest known structural homolog, the |
| 6 | 3sdo | - | https://link.springer.com/article/10.1007/s12539-017-0266-z | A Comprehensive Computational Analysis of Mycobacterium Genomes Pinpoints the Genes Co-occurring with YczE, a Membrane Protein Coding Gene | 2017 | T Milano, S Angelaccio, A Tramonti, ML di Salvo- Interdisciplinary, 2017 - Springer | Clustal Omega multiple sequence alignment between the “luciferase-like” cluster sequences and a set of PDB structures detected by Phyre2 and/or HHpred. Sequence ids refer to Table 3 while PDB codes indicate: 3SDO|A, the chain A of nitrilotriacetate monooxygenase from Burkholderia pseudomallei |
| 7 | 5idv | - | https://www.sciencedirect.com/science/article/pii/S002228601831439X | Synthesis, spectroscopic properties, crystal structure, antimicrobial properties and Molecular Docking Studies of the complex (1) 3 (C36H24MnN6) 6 (PF6). 0.5 H2O | 2018 | HEL Hamdani, MEL Amane, C Duhayon- Journal of Molecular Structure, 2018 - Elsevier | Docking studies was proceeded by taking the five receptors (The PDB id: 1E15(S 3BU2 (S. saprophiticus), 3GFX (klipsila pnumani), 1BY3 (E. coli) and 5IDV (acinetobacter baumannii determination of complex (1) confirmed the assignments of the structure from spectroscopic data |
| 8 | 2mj3 | - | https://www.frontiersin.org/articles/10.3389/fenrg.2019.00079/abstract | Evolutionary relationships between low potential ferredoxin and flavodoxin electron carriers | 2019 | IJ Campbell, GN Bennett, JJ Silberg- Frontiers in Energy Research, 2019 - frontiersin.org | This bioinformatic study highlights understudied PECs whose structure , stability, and partner specificity should be 1CZP, 2WLB, 3LXF, 1B9R, 1UWM, 1PDX, 1M2D, 1I7H, 3AH7, 2MJD, 2MJ3 , 2Y5C, 5FFI For Flds, we used PDB IDs 2FZ5, 1FLD, 4HEQ, 2HNA, 2FX2, 3F6R, 3KAP |
| 9 | 3p96 | - | https://www.sciencedirect.com/science/article/pii/S0223523422008376 | Targeting the phosphoserine phosphatase MtSerB2 for tuberculosis drug discovery, an hybrid knowledge based/fragment based approach | 2023 | M Haufroid, AN Volkov, J Wouters- European Journal of Medicinal, 2023 - Elsevier | model (Fc) solved at 2.05 resolution ( PDB : 3P96 ) [24] and with experimental reflection data (Fo). In the present paper, previously acquired knowledge on the structural and inhibition |
| 10 | 6q04 | 6VXX | https://www.researchsquare.com/article/rs-37300/latest.pdf | N-terminal domain (NTD) of SARS-CoV-2 spike-protein structurally resembles MERS-CoV NTD sialoside-binding pocket | 2020 | M Awasthi, S Gulati, DP Sarkar, S Tiwari, S Kateriya - 2020 - researchsquare.com | W program [14]. Structure preparation The cryo-EM structures of SARS-CoV-2 ( PDB ID: 6VXX) [8] and MERS-CoV ( PDB ID: 6Q04 ) [10] spike spike glycoprotein (YP_009724390. 1) was strongly biased on the crystal structure of SARS-CoV-2, while |