We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 4WSO | 2014 | 2 |
| 4IWH | 2013 | 2 |
| 4XEL | 2015 | 2 |
| 5DEO | 2016 | 2 |
| 3JS5 | 2009 | 2 |
| 4I1U | 2013 | 2 |
| 4TWR | 2014 | 2 |
| 3RRV | 2011 | 2 |
| 4PCL | 2014 | 2 |
| 4IG6 | 2012 | 2 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3inn | - | http://pubs.acs.org/doi/abs/10.1021/bi1004206 | Substrate-induced closing of the active site revealed by the crystal structure of pantothenate synthetase from Staphylococcus aureus | 2010 | A Satoh, S Konishi, H Tamura, HG Stickland? - Biochemistry, 2010 - ACS Publications | ... entry 2EJC) and the ATP complex structure of a protein annotated as PS of Brucella melitensis (PDB entries 3INN). In general, the PS protomer can be divided into two domains (N- and C-terminal domains), with the active site located at the interface of these domains. ... |
| 2 | 2kwl | 2lol, 2lky, 2l3v | http://link.springer.com/10.1140/epje/i2013-13062-7 | Protein packing defects heat up interfacial water | 2013 | MB Sierra, SR Accordino, JA Rodriguez-Fris? - The European Physical Journal E, 2013 - Springer | ... 2BZT, 2eyz, 2FDQ, 2GEQ, 2jqx, 2JQY, 2JU6, 2K0P, 2K4Q, 2KJG, 2KV4, 2KWD, 2KWL, 2L3V, 2L4V ... ex- plicitly the situation for one of the proteins studied: the p53 protein (PDB 2GEQ ... this molecule represents one of the largest dehydron clusters in the Protein Data Bank [9]. From ... |
| 3 | 3sds | - | http://dx.plos.org/10.1371/journal.pone.0031528 | New Insight into the Transcarbamylase Family: The Structure of Putrescine Transcarbamylase, a Key Catalyst for Fermentative Utilization of Agmatine | 2012 | LM Polo, F Gil-Ortiz, A Cant?n, V Rubio - PloS one, 2012 - dx.plos.org | ... the closest structures to that of the PTC subunit those of the subunits of pfOTC, Thermotoga maritima OTC (tmOTC) and hOTC, (Protein Databank files 1PVV ... PDB files are the following for OTCs: human, 1OTH; Ovis aries, 1FB5; Coccidioides immitis, 3SDS; P. furiosus1PVV ... |
| 4 | 3kx6 | - | http://www.sciencedirect.com/science/article/pii/S002228361400518X | Structural and Functional Divergence of the Aldolase Fold in Toxoplasma gondii | 2014 | ML Tonkin, AS Halavaty, R Ramaswamy, J Ruan… - Journal of molecular …, 2014 - Elsevier | ... We also determined the structure of TgDPA in a different crystal form (data not shown but structuredeposited with identifier PDB ID 3QYQ ... However, preliminary sequence and structural comparisonof several dR5P aldolases (rmsd of < 2.0 Å and sequence homology as low ... |
| 5 | 3d5t | - | http://onlinelibrary.wiley.com/doi/10.1002/prot.24743/full | Structures of citrate synthase and malate dehydrogenase of Mycobacterium tuberculosis | 2015 | DM Ferraris, R Spallek, W Oehlmann… - Proteins: Structure, …, 2015 - Wiley Online Library | ... thermophilus (4KDE), Thermus flavus (1BDM), Aquaspirillum articum (1B8P), and Burkholderiapseudomallei (3D5T). ... RMSD = 1.4 Å) and malate dehydrogenase from T. flavus (PDB code =1BMD ... The structure of M. tuberculosis malate dehydrogenase shows the presence of a ... |
| 6 | 4f2n | - | https://scripts.iucr.org/cgi-bin/paper?or5020 | Crystal structure of an iron superoxide dismutase from the pathogenic amoeba Acanthamoeba castellanii | 2019 | O Dao, K Asaithambi, BK Na, KH Lee- Section F: Structural Biology, 2019 - scripts.iucr.org | et al., 2014), P. falciparum ( PDB entry 2bpi; Boucher et al., 2006) and L. major ( PDB entry 4f2n ; Phan et al., 2015) and of MnSOD from Homo sapiens ( PDB entry 5vf9 architecture of AcFeSOD is similar to those of other Fe/MnSODs, including the E. coli FeSOD structure (Fig |
| 7 | 4ni5 | 4weo, 5jy1 | https://biotechnologyforbiofuels.biomedcentral.com/articles/10.1186/s13068-020-0... | Phylogenetics-based identification and characterization of a superior 2, 3-butanediol dehydrogenase for Zymomonas mobilis expression | 2020 | V Subramanian, VV Lunin- Biotechnology, 2020 - biotechnologyforbiofuels | Zymomonas mobilis has recently been shown to be capable of producing the valuable platform biochemical, 2,3-butanediol (2,3-BDO). Despite this capability, the production of high titers of 2,3-BDO is restricted by several physiological parameters. ... The initial model was built based on PDB entry 4ni5 with FFAS03 search and ProtMod modeling servers [50,51,52] using the SCWRL method. |
| 8 | 3p96 | - | http://www.jbc.org/content/289/36/25149.short | High Throughput Screen Identifies Small Molecule Inhibitors Specific for Mycobacterium tuberculosis Phosphoserine Phosphatase | 2014 | G Arora, P Tiwari, RS Mandal, A Gupta - Journal of Biological Chemistry, 2014 - ASBMB | ... not available. The closest homolog for SerB2 protein was SerB protein from Mycobacterium avium (Protein Data Bank code 3P96) with 84% sequence identity, 99% query coverage, and an E value of 0.0. The superimpositions ... |
| 9 | 4ed9 | - | https://www.sciencedirect.com/science/article/pii/S1570963918301808 | Rv3272 encodes a novel Family III CoA transferase that alters the cell wall lipid profile and protects mycobacteria from acidic and oxidative stress | 2018 | KS Shrimant, S Pandey, A Ansari, S Das- et Biophysica Acta (BBA, 2018 - Elsevier | The structure was found similar to the homologues available including MCR ( PDB ID: 1X74), CaiB ( PDB ID: 1XA3), FRC ( PDB ID: 2VJQ), FRC ( PDB ID: 3UBM), ACOCT ( PDB ID: 4ED9 ), YfdE ( PDB ID: 4HL6 3.5. Solution structure using Small Angle X-ray Scattering (SAXS). |
| 10 | 3o2e | - | http://onlinelibrary.wiley.com/doi/10.1111/mmi.12649/full | Morphogenes bolA and mreB mediate the photoregulation of cellular morphology during complementary chromatic acclimation in Fremyella diplosiphon | 2014 | SP Singh, BL Montgomery - Molecular microbiology, 2014 - Wiley Online Library | ... Hypo, gene encodes hypothetical protein. C. Putative structure of F. diplosiphon BolA (in green) modelled on the Babesia bovis BolA structure (in red, PDB:3O2E; Abendroth et al., 2011) using two independent protein structure prediction servers, ie I-TASSER and PHYRE. ... |