Cited Structures: list of articles citing SSGCID structures

We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.

This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.

Cited structures

Structure	Year released	#citations
5W15	2017	2
4Y0V	2015	2
4XXP	2015	2
6C6B	2018	2
5V0W	2018	2
3LO0	2010	2
5VOG	2017	2
3E7D	2008	2
3LGJ	2010	2
4JQP	2013	2

Manually reviewed citations

#	PDB	Additional SSGCID structures cited	Link	Title	Year	Citation	Highlighted abstract
1	4kzk	-	https://link.springer.com/article/10.1007/s10930-021-09970-z	Structural Flexibility of Peripheral Loops and Extended C-terminal Domain of Short Length Substrate Binding Protein from Rhodothermus marinus	2021	JE Bae, IJ Kim, Y Xu, KH Nam- The protein journal, 2021 - Springer	of RmSBP, we performed comparative analysis and substrate docking studies using a previously reported crystal structure of SBP ( PDB code 5Z6V) as the initial model structure Among them, 9 models ( PDB codes: 3LFT, 2QH8, 5ER3, 4RS3, 4KZK , 5BRA, 3KSM, 2DRI
2	7jva	-	https://www.nature.com/articles/s41467-023-35949-8.pdf	Structural basis for a conserved neutralization epitope on the receptor-binding domain of SARS-CoV-2	2023	KYA Huang, X Chen, A Mohapatra- Nature, 2023 - nature.com	PDB code 7M7B for 3D11 and 7JVA for S2A4. c IS-9A and similar antibodies extend their footprints upwards and contact residue 408 and the residues 502-504 region.
3	6wps	-	https://www.biorxiv.org/content/10.1101/2021.01.25.427846v1.abstract	SARS-CoV-2 receptor binding mutations and antibody mediated immunity.	2021	M Mejdani, K Haddadi, C Pham, R Mahadevan- BioRxiv, 2021 - biorxiv.org	39 ( PDB : 7JMP), CV07- 250 ( PDB : 6XKQ), P2B-2F6 ( PDB : 7BWJ), CV07-270 ( PDB : 6XKP), BD-368-2 ( PDB : 7CHE), and S309 ( PDB : 6WPS ) 53 Laskowski, RA PDBsum: summaries and analyses of PDB structures Fig.1: Structure of SARS-CoV-2 RBD bound to ACE2 receptor
4	4k6f	-	https://repository.up.ac.za/handle/2263/62274	Cloning, expression and molecular modeling of the anthocyanidin reductase (FaANR) gene during strawberry fruit development	2017	PC Mandave, AA Kuvalekar, NL Mantri, MA Islam - 2017 - repository.up.ac.za	on 3D structure of ANR obtained from homology modeling technique to check binding interaction of template molecule ( PDB ID: 4K6F ) with bound Their complex structure limits the com- mercial chemical synthesis and we are therefore highly re- liant on plants, especially
5	3la9	-	http://www.springerlink.com/index/M46X0Q11002X8755.pdf	Structure and biology of trimeric autotransporter adhesins	2011	A ?yskowski, JC Leo, A Goldman - Bacterial Adhesion, 2011 - Springer	... The structures are identified by their PDB ID codes where avail- able. ... structure of Haemophilus HiaDB2; (c) 3emi: structure of Haemophilus Hia 307?442 non-adhesive domain; (d) 3emo: structure of transmembrane domain of Haemophilus Hia 973?1098; (e) 3la9: structure of ...
6	5ve7	-	https://scripts.iucr.org/cgi-bin/paper?rf5020	Crystal structure of UDP-glucose pyrophosphorylase from Yersinia pestis, a potential therapeutic target against plague	2019	ME Gibbs, GT Lountos, R Gumpena- Section F: Structural, 2019 - scripts.iucr.org	A over 278 aligned residues, 72% sequence identity), Burkholderia ambifaria ( PDB entry 5ve7 ; rmsd of 1.3 A over 275 aligned residues, 52% sequence identity), Helico- bacter pylori ( PDB entry 3juk Figure 1 (a) Stereoview of a cartoon representation of the crystal structure of Y
7	6pqh	-	https://www.sciencedirect.com/science/article/pii/S0969212621001647	Structural study of the N-terminal domain of human MCM8/9 complex	2021	J Li, D Yu, L Liu, H Liang, Q Ouyang, Y Liu- Structure, 2021 - Elsevier	Journal home page for Structure . Article. Structural study of the N-terminal domain of human MCM8/9 complex Show more Share. Cite Highlights. The heterohexameric NTD structure combined crystal structures with cryo-EM map. ...Some other structures with less than 2.0 Å RMSD include DNA-directed DNA polymerase III (PDB: 3F2B), asparagine-tRNA ligase (PDB: 6PQH), replication protein A (PDB: 2K5V), telomerase-associated protein
8	3gka	-	http://www.sciencedirect.com/science/article/pii/S0301462213001397	Structural studies of the< i> Trypanosoma cruzi</i> Old Yellow Enzyme: Insights into enzyme dynamics and specificity	2013	MT Murakami, NC Rodrigues, LM Gava? - Biophysical Chemistry, 2013 - Elsevier	... of the TcOYE structure in P2 1 2 1 2 1 and P2 1 crystalline forms have been deposited in the Protein Data Bank with the ... ? rmsd over 348 C? atoms - PDB code: 2GOU) and Burkholderia pseudomallei (BpOYE - 1.24 ? rmsd over 341 C? atoms - PDB code: 3GKA) revealed a ...
9	5vp5	-	https://aca.scitation.org/doi/full/10.1063/4.0000089	Developing a macromolecular crystallography driven CURE	2021	KJ McLaughlin - 2021 - aca.scitation.org	While these protein x-ray crystallography structures are key to allowing students to CURE that could expose and excite a next generation of potential structural scientists 3 3. KJ McLaughlin, Understanding structure : A computer-based macromolecular biochemistry lab activity, J
10	4dgq	-	http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0169540	Crystal Structure and Functional Characterization of an Esterase (EaEST) from Exiguobacterium antarcticum	2017	CW Lee, S Kwon, SH Park, BY Kim, W Yoo, BH Ryu - PloS one, 2017 - journals.plos.org	... PDB code 3FOB), haloperoxidase (PDB code 1A8S), chloroperoxidase (PDB code 4DGQ), andesterase ... Comparison of EaEST structure with that of PfEST. Structural comparison usingsuperimposition between EaEST and PfEST (PDB code 3HI4, acetate-bound form) shows ...