We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 5VBF | 2017 | 2 |
| 4XXP | 2015 | 2 |
| 3L0G | 2009 | 2 |
| 5VEV | 2017 | 2 |
| 5VIU | 2017 | 2 |
| 6AQG | 2017 | 2 |
| 6AO1 | 2017 | 2 |
| 6E4E | 2018 | 2 |
| 6MN8 | 2018 | 2 |
| 6NLX | 2019 | 2 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3hhe | 3uw1, 3u7j, 3s5p | http://scripts.iucr.org/cgi-bin/paper?S174430911204273X | Structure of ribose 5-phosphate isomerase from the probiotic bacterium Lactobacillus salivarius UCC118 | 2012 | CMC Lobley, P Aller, A Douangamath? - Acta Crystallographica Section F Structural Biology and Crystallization Communications, 2012 - scripts.iucr.org | ... (2006). Acta Cryst. F62, 427-431.] ), Bartonella henselae (PDB entry 3hhe ; Seattle Structural Genomics Center for Infectious Disease, unpublished work), Vibrio vulnificus YJ016 (Kim et al., 2009 [Kim, TG, Kwon, TH, Min, K., Dong, M.-S., Park, YI & Ban, C. (2009). Mol. ... |
| 2 | 3gka | - | http://www.sciencedirect.com/science/article/pii/S0301462213001397 | Structural studies of the< i> Trypanosoma cruzi</i> Old Yellow Enzyme: Insights into enzyme dynamics and specificity | 2013 | MT Murakami, NC Rodrigues, LM Gava? - Biophysical Chemistry, 2013 - Elsevier | ... of the TcOYE structure in P2 1 2 1 2 1 and P2 1 crystalline forms have been deposited in the Protein Data Bank with the ... ? rmsd over 348 C? atoms - PDB code: 2GOU) and Burkholderia pseudomallei (BpOYE - 1.24 ? rmsd over 341 C? atoms - PDB code: 3GKA) revealed a ... |
| 3 | 4wxt | - | https://www.sciencedirect.com/science/article/pii/S014181301830610X | Inhibition of thioredoxin A1 from Corynebacterium pseudotuberculosis by polyanions and flavonoids | 2018 | RJ Eberle, LA Kawai, FR de Moraes, D Olivier- International journal of, 2018 - Elsevier | The initial model of the Cp-TrxA1 protein was obtained by homology modeling with the M. avium Trx structure ( PDB : 4WXT ; 50% homology), in order to Structural superposition of the Cp-TrxA1 homology model and the M. avium Trx structure showed a RMSD of 0.188 (Fig |
| 4 | 3s4k | - | http://pubs.acs.org/doi/abs/10.1021/acs.biochem.5b01050 | Polyketide Ring Expansion Mediated by a Thioesterase, CEC Domain, in Azinomycin Biosynthesis: Characterization of AziB and AziG | 2016 | S Mori, D Simkhada, H Zhang, MS Erb, Y Zhang - Biochemistry, 2016 - ACS Publications | ... he structures of AziG were determined using the molecular replacement method, with Mycobacterium tuberculosis thioesterase (PDB entry 3S4K) as the initial model. . ... |
| 5 | 3rr2 | - | http://www.sciencedirect.com/science/article/pii/S1570963913003543 | Biochemical properties of nematode< i> O</i>-acetylserine (thiol) lyase paralogs imply their distinct roles in hydrogen sulfide homeostasis | 2013 | R Vozdek, A Hn?zda, J Krijt, L ?er?, V Ko?ich - Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics, 2013 - Elsevier | ... First, their amino acid sequences, together with sequences of OAS-TL (PDB ID: 1D6S, 1FCJ, 1O58, 1VE1, 1Y7L, 1Z7W, 2EGU, 2JC3, 2PQM, 2Q3D, 2V03 and 3RR2) and CBS (PDB ID: 1JBQ and 3PC3) were aligned using MUSCLE 3.8.31 [23]. ... |
| 6 | 3k14 | - | http://pubs.acs.org/doi/abs/10.1021/ci400020a | An Extensive and Diverse Set of Molecular Overlays for the Validation of Pharmacophore Programs | 2013 | I Giangreco, DA Cosgrove? - Journal of chemical information and modeling, 2013 - ACS Publications | ... All such algorithms must be validated with respect to known ligand overlays, usually by extracting ligand overlay sets from the Protein Data Bank (PDB). ... This is almost always done by reference to structures drawn from the Protein Data Bank (PDB). ... |
| 7 | 4dyw | 3hhj | http://onlinelibrary.wiley.com/doi/10.1002/prot.25223/full | The evolution of function within the Nudix homology clan | 2017 | JR Srouji, A Xu, A Park, JF Kirsch- Proteins: Structure,, 2017 - Wiley Online Library | ... Despite the structural similarity, sequence identity within the Nudix homology domain between these ... and X is any amino acid) constitutes a loop-helix-loop structure that is ... diphosphate isomerase family (represented by E. coli isopentenyl diphosphate isomerase PDB ID: 1NFS ... |
| 8 | 4f3p | - | http://onlinelibrary.wiley.com/doi/10.1111/mmi.12274/full | Molecular and structural basis of glutathione import in Gram-positive bacteria via GshT and the cystine ABC importer TcyBC of Streptococcus mutans | 2013 | B Vergauwen, K Verstraete? - Molecular Microbiology, 2013 - Wiley Online Library | ... binding protein HisJ of Salmonella enterica (Oh et al., 1994; Yao et al., 1994), D177 and R96 in the arginine-binding protein of Salmonella typhimurium (Stamp et al., 2011), and D180 and R98 in the glutamine-binding protein of Burkholderia pseudomallei (PDB code: 4F3P). ... |
| 9 | 6ok4 | 4lsm, 4k9d | https://www.sciencedirect.com/science/article/pii/S0300908421000249 | Structure determination and analyses of the GAPDH from the parasite Schistosoma mansoni, the first one from a platyhelminth | 2021 | S Boreiko, M Silva, J Iulek- Biochimie, 2021 - Elsevier | The GAPDH’s structures selected for sequence alignment were from: Brugia malayi, Bmal - PDB ID: 4K9D ... and Chlamydia trachomatis, Ctra - PDB ID: 6OK4 [66] |
| 10 | 3gtd | 3tv2, 3rd8, 3rrp, 3qbp, 3ome, 3oc7, 3njb, 3njd, 3myb, 3moy, 3he2, 3h81, 4qfe | http://www.sciencedirect.com/science/article/pii/S0734975015000208 | Stereochemistry of enzymatic water addition to C= C bonds | 2015 | BS Chen, LG Otten, U Hanefeld - Biotechnology Advances, 2015 - Elsevier | ... Entry, Name (EC-number), Sources (PDB-number), Types of reaction, Cofactor, Regio- andstereoselectivity. ... sapiens (3E04) Mycobacterium abscessus (3RRP) Sinorhizobium meliloti (4HGV)Thermus thermophilus (1VDK) Rickettsia prowazekii (3GTD) Mycobacterium tuberculosis ... |