We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 3GK0 | 2009 | 2 |
| 4JWP | 2013 | 2 |
| 6XRS | 2020 | 2 |
| 7JP4 | 2021 | 2 |
| 4N67 | 2014 | 2 |
| 4N0W | 2013 | 2 |
| 5VML | 2017 | 2 |
| 4LW8 | 2013 | 2 |
| 7KM9 | 2021 | 2 |
| 6O4A | 2020 | 2 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 4kzk | - | https://link.springer.com/article/10.1007/s10930-021-09970-z | Structural Flexibility of Peripheral Loops and Extended C-terminal Domain of Short Length Substrate Binding Protein from Rhodothermus marinus | 2021 | JE Bae, IJ Kim, Y Xu, KH Nam- The protein journal, 2021 - Springer | of RmSBP, we performed comparative analysis and substrate docking studies using a previously reported crystal structure of SBP ( PDB code 5Z6V) as the initial model structure Among them, 9 models ( PDB codes: 3LFT, 2QH8, 5ER3, 4RS3, 4KZK , 5BRA, 3KSM, 2DRI |
| 2 | 4pfz | 3rr6, 3qdf | https://www.sciencedirect.com/science/article/pii/S0006291X18328705 | Structural and functional analysis of a dimeric fumarylacetoacetate hydrolase (EaFAH) from psychrophilic Exiguobacterium antarcticum | 2019 | W Yoo, CW Lee, B Kim, LTHL Le, SH Park- Biochemical and, 2019 - Elsevier | overall monomer structure , a schematic diagram of the connectivity, and the residue numbering of each secondary structure are shown in ID:3RR6, Z score: 34.6), a 5-carboxymethyl-2- hydroxymuconate delta-isomerase from Mycobacterium smegmatis ( PDB ID: 4PFZ ; Z score |
| 3 | 7ki4 | 7ki6 | https://link.springer.com/article/10.1007/s11030-024-10932-7 | From antibiotic to antiviral: computational screening reveals a multi-targeting antibiotic from Streptomyces spp. against Nipah virus fusion proteins | 2024 | NMO Odchimar, MAB Macalalad, FL Orosco- Molecular Diversity, 2024 - Springer | , a crystal structure was used ( PDB ID: 5EVM). structure , homology modeling was performed using SWISSMODEL with the following PDB structure files as reference structures : 7KI4 and |
| 4 | 3laa | - | http://www.sciencedirect.com/science/article/pii/S1438422114001349 | Haemophilus influenzae surface fibril (Hsf) is a unique twisted hairpin-like trimeric autotransporter | 2014 | B Singh, T Al Jubair, M Mörgelin, A Sundin… - International Journal of …, 2014 - Elsevier | ... The templates are presented as Hsf amino acids (PDB code of template: identity/similarity, gap),0136 ... 1863–2023 (1s7m: 73/79, 3), 2024–2143 (2qih: 11/23, 0), 2144–2315 (3laa: 15/22 ... A domain close to the C-terminal (2144–2315 aa) was constructed from PDB:3laa with low identity, but having a high local similarity. ... |
| 5 | 4ol9 | - | https://www.cell.com/heliyon/fulltext/S2405-8440(24)11679-9?uuid=uuid%3A33150438... | Exploring Indonesian actinomycete extracts for anti-tubercular compounds: Integrating inhibition assessment, genomic analysis, and prediction of its target by | 2024 | A Nurkanto, JCE Tampubolon, MF Ewaldo, AL Putri- Heliyon, 2024 - cell.com | The resulting structures that underwent energy minimization through the MM2 method were saved in PDB format. Additionally, non-polar hydrogen atoms within the ligands were ... We selected 21 enzymes target as follow: Mt enoyl reductase (InhA; MtInhA; PDB ID: 4TRJ),...Mt 2-dehydropantoate 2-reductase (PanE; MtPanE; PDB ID: 4OL9), |
| 6 | 3u0d | - | https://www.sciencedirect.com/science/article/pii/S1093326321000309 | Acute phase 1-acid glycoprotein as a siderophore-capturing component of the human plasma: A molecular modeling study | 2021 | SA Samsonov, F Zsila, M Maszota-Zieleniak- Journal of Molecular, 2021 - Elsevier | JavaScript is disabled on your browser. Please enable JavaScript to use all the features on this page. Skip to main content Skip to article |
| 7 | 7jzu | - | https://www.sciencedirect.com/science/article/pii/S002197972401422X | Bioengineered self-assembled nanofibrils for high-affinity SARS-CoV-2 capture and neutralization | 2024 | M Behbahanipour, S Navarro, O Brcenas- Journal of colloid and, 2024 - Elsevier | extracted from the Cryo-EM structure of the minibinder bound to the SARS-CoV-2 Spike protein ( pdb entry 7JZU ). However, due to the relatively low resolution of the structure (3.1 ), |
| 8 | 3sw5 | 3fq3 | https://link.springer.com/article/10.1134/S0006297920030086 | Effect of Structure Variations in the Inter-subunit Contact Zone on the Activity and Allosteric Regulation of Inorganic Pyrophosphatase from Mycobacterium tuberculosis | 2020 | RS Romanov, SA Kurilova, AA Baykov- Biochemistry (Moscow, 2020 - Springer | of Ec PPase [15, 16], and bound L malate was found in the crystal struc ture of PPase from Bartonella henselae ( PDB ID 3SW5 ) Furthermore, modification of the subunit contact zones does not change the oligomeric structure of Mt PPase, but makes it less compact, as shown |
| 9 | 2kwl | 2lol, 2lky, 2l3v | http://link.springer.com/10.1140/epje/i2013-13062-7 | Protein packing defects heat up interfacial water | 2013 | MB Sierra, SR Accordino, JA Rodriguez-Fris? - The European Physical Journal E, 2013 - Springer | ... 2BZT, 2eyz, 2FDQ, 2GEQ, 2jqx, 2JQY, 2JU6, 2K0P, 2K4Q, 2KJG, 2KV4, 2KWD, 2KWL, 2L3V, 2L4V ... ex- plicitly the situation for one of the proteins studied: the p53 protein (PDB 2GEQ ... this molecule represents one of the largest dehydron clusters in the Protein Data Bank [9]. From ... |
| 10 | 4lc3 | - | https://royalsocietypublishing.org/doi/abs/10.1098/rsob.170248 | Structural and functional studies of Spr1654: an essential aminotransferase in teichoic acid biosynthesis in Streptococcus pneumoniae | 2018 | X Han, R Sun, T Sandalova, A Achour- Open biology, 2018 - royalsocietypublishing.org | The crystal structures of Spr1654 and in complex with PLP and PMP can direct the future rational design of novel therapeutic compounds against S. pneumoniae... The crystal structures were determined by molecular replacement in Phaser [40] using the crystal structure of UDP-4-amino-4-deoxy-l-arabinose-oxoglutarate aminotransferase from Burkholderia cenocepacia (PDB code: 4LC3) as search model. |