We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 4DS3 | 2012 | 1 |
| 5J46 | 2016 | 1 |
| 5IDT | 2016 | 1 |
| 5W7Z | 2017 | 1 |
| 8FI6 | 2022 | 1 |
| 5IDQ | 2016 | 1 |
| 8G0S | 2023 | 1 |
| 5EPF | 2015 | 1 |
| 5HW3 | 2016 | 1 |
| 6UDF | 2019 | 1 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 2lbb | 2l4b | https://arxiv.org/abs/1901.00991 | Physical Folding Codes for Proteins | 2019 | X Ma, C Hou, L Shi, L Li, J Li, L Ye, L Yang- arXiv preprint arXiv, 2019 - arxiv.org | 15 Soares, CM, Teixeira, VH & Baptista, AM Protein Structure and Dynamics in Nonaqueous Solvents: Insights from Nature Structural Biology 10, 980, doi:10.1038/nsb1203-980 (2003 JL The worldwide Protein Data Bank (wwPDB): ensuring a single, uniform archive of PDB data |
| 2 | 3gvf | - | http://cdn.intechopen.com/pdfs-wm/46885.pdf | From Tilings to FibersBio-mathematical Aspects of Fold Plasticity | 2014 | C Lesieur, L Vuillon - 2014 - cdn.intechopen.com | ... According to the PDB (Protein Data Bank [30] ) where all available atomic structures of proteins are stored ... x-ray structure of the cholera toxin B pentamer (CtxB5) is shown (PDB code 3CHB). ... Example with the protein 3GVF (PDB code), a D3 symmetry oligomer made of 6 chains ... |
| 3 | 3tmg | 4z9n, 4f3p | https://www.biorxiv.org/content/10.1101/2021.01.27.428399v1.abstract | Gating the channel pore of ionotropic glutamate receptors with bacterial substrate binding proteins | 2021 | M Bernhard, B Laube- bioRxiv, 2021 - biorxiv.org | The bacterial GluR0 receptor was chosen due to its less complex architecture compared to eukaryotic iGluRs, characterized by the lack of an NTD, a Therefore, we used the structure of the glutamate-bound closed GluR0-LBD conformation (Mayer et al., 2001) ( PDB ID |
| 4 | 7jw0 | 7k45, 7lxy, 7so9, 7sob | https://academic.oup.com/ve/article-abstract/11/1/veaf027/8159764 | Comprehensive analysis of SARS-CoV-2 Spike evolution: epitope classification and immune escape prediction | 2025 | NFB Teruel, M Crown, R Rajsbaum, M Bashton- Virus, 2025 - academic.oup.com | to epitope 3 from structures 7A5R, 6W41, 7LM8, 7S5Q, 7JW0 , 7X1M, and 7R6X. Comparing all the vectors of interaction for S309, we see that one Kappa structure ( PDB 7SOB), from |
| 5 | 3i4e | 3p0x | http://link.springer.com/article/10.1007/s11274-013-1258-8 | Residues Asn214, Gln211, Glu219 and Gln221 contained in the subfamily 3 catalytic signature of the isocitrate lyase from Pseudomonas aeruginosa are involved in its catalytic and thermal properties | 2013 | J Campos-Garcia, C Diaz-Perez? - World Journal of Microbiology and Biotechnology, 2013 - Springer | ... The ICL-Pa model in the open state was built using homologous ICL from A. nidulans (PDB 1DQU), Burkholderia pseudomallei (PDB 3I4E), and E. coli (PDB 1IGW), whereas the closed state model was built using the closed model of a homologous ICL from Brucella melitensis ... |
| 6 | 3mqw | 3m1x | https://link.springer.com/article/10.1007/s00436-018-6065-6 | Identification of a perchloric acid-soluble protein (PSP)-like ribonuclease from Trichomonas vaginalis | 2018 | A Villalobos-Osnaya, G Garza-Ramos, IN Serratos- Parasitology, 2018 - Springer | The trimeric model was built using a crystal- lographic ribonuclease structure ( PDB ID: 3R0P) as a tem resolution less than 2 (1QU9, 3M1X, 2UYK, 2UYN, 2CVL, 1JD1, 1QD9, 3QUW, 3MQW , 3VCZ, 1ONI 4e). To gain insight the secondary structure properties of rTv-PSP1, itsfar |
| 7 | 3d64 | 3glq, 3n58 | http://pubs.acs.org/doi/abs/10.1021/acs.jcim.5b00299 | An Inexpensive Method for Selecting Receptor Structures for Virtual Screening | 2015 | Z Huang, CF Wong - Journal of chemical information and , 2015 - ACS Publications | ... SPI also performed better than the best docking energy, the molecular volume of thebound ligand, and the resolution of crystal structure in selecting good receptorstructures for virtual screening. The implications of these findings ... |
| 8 | 4fkx | - | http://link.springer.com/chapter/10.1007/978-3-319-01845-4_13 | Protein Secondary Structure Detection Using Dihedral Angle Parameters Evaluation | 2014 | M Diez, V Petuya, I Mart?nez, A Hern?ndez - The 11th IFToMM International Symposium on Science of Mechanisms and Machines Mechanisms and Machine Science , 2014 - Springer | ... To check the results obtained with the procedure, they have been compared with each proteins' structural data, available on the Protein Data Bank (PDB) and experimentally obtained. ... 1zac. 96.6. 1k9p. 96.62. 3cln. 97.2. 1k20. 93.48. 2peq. 100. 4fkx. 82.35. 3sza. 86.6. ... |
| 9 | 3upt | - | http://elib.uni-stuttgart.de/handle/11682/1465 | Systematic analysis of the sequence-structure-function relationships of thiamine diphosphate-dependent enzymes | 2015 | C Vogel - 2015 - elib.uni-stuttgart.de | ... A putative acetohydroxyacid synthase (AHAS) from the yeast Torulaspora delbrueckii (TdAHAS, sid|11616) and a transketolase from Agrobacterium tumefaciens (AtTK, sid|29832), both missing experimentally determined structure information, were modeled using the structures of ScAHAS (pdb|1N0H, Pang et al. 2004) and the transketolase from Burkholderia pseudomallei (BpTK, pdb|3UPT, Baugh et al. 2013) as templates, respectively.e ... |
| 10 | 3laa | 4lgo, 3s6l | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7688925/ | Non-adaptive evolution of trimeric autotransporters in Brucellaceae | 2020 | MR Rahbar, M Zarei, A Jahangiri, S Khalili- Frontiers in, 2020 - ncbi.nlm.nih.gov | domain from Haemophilus influenzae genome ( PDB ID:1S7M; Yeo et al., 2004); structure of the parallel beta-roll collagen-binding domain of Yersinia enterocolitica adhesin YadA ( PDB ID: 1P9H Batch analyzes of the dataset suggested the existence of a few structural domains |