We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 4YWE | 2015 | 1 |
| 3U0B | 2011 | 1 |
| 6PTV | 2019 | 1 |
| 5DB4 | 2016 | 1 |
| 3R6H | 2011 | 1 |
| 8SBN | 2023 | 1 |
| 3UCX | 2011 | 1 |
| 8DTC | 2022 | 1 |
| 4O6V | 2014 | 1 |
| 5U8O | 2017 | 1 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 2kn9 | - | https://www.ijper.org/sites/default/files/IndJPhaEdRes_53_2s-143.pdf | Structure Based Computational Exploration of Beilschmiedia Compounds with Selected Targets against Multidrug-Resistant Mycobacterium tuberculosis | 2019 | M Yasir, P Singh, S Chohan, R Shrivastava- INDIAN JOURNAL OF, 2019 - ijper.org | Protein Name PDB - ID Binding Energy (kcal/mol) Antigen 85C 1dqz -3.34 Cytochrome P450 Crystal structure of 3-bromopyruvate modified isocitrate lyase (icl) 1f8m -2.09 EmbR 2ff4 -4.38 Hydroxymycolate synthase MmaA4 2fk7 - Zinc-substituted rubredoxin B 2kn9 -3.46 Cell |
| 2 | 3uf8 | - | http://bioinformatics.oxfordjournals.org/content/early/2015/03/22/bioinformatics... | AIDA: ab initio domain assembly for automated multi-domain protein structure prediction and domain–domain interaction prediction | 2015 | D Xu, L Jaroszewski, Z Li, A Godzik - Bioinformatics, 2015 - Oxford Univ Press | ... the first domain in SMT fusion Peptidyl-prolyl cis-trans isomerase (PDB ID 3uf8, chain A ... For example, the linker between the two domains in scFv-IL-1B complex (PDB ID 2kh2 ... for assembly of independently determined domains than for domains extracted from the structure of the ... |
| 3 | 3s6l | - | https://www.frontiersin.org/articles/10.3389/fbioe.2020.613986/pdf | Modelled structure of the cell envelope proteinase of Lactococcus lactis | 2020 | EB Hansen, P Marcatili- Frontiers in bioengineering and, 2020 - frontiersin.org | The architecture of the L. lactis CEP shares features with a large number of serine proteases to use current state of the art structure prediction algorithms to establish a structural model of software (version 2.3.3)2 was used for visualization and editing of protein structure PDB files |
| 4 | 3ijp | - | http://www.biochemj.org/content/early/2017/11/28/BCJ20170709.abstract | Plant DHDPR forms a dimer with unique secondary structure features that preclude higher order assembly | 2017 | SAJ Watkin, JR Keown, E Richards- Biochemical, 2017 - biochemj.org | Cirilli, M., Zheng, RJ, Scapin, G., and Blanchard, JS (2003) The three-dimensional structures of the Structural and mutagenic analysis of relaxed nucleotide specificity Scapin, G., Reddy, SG, Zheng, R., and Blanchard, JS (1997) Three-dimensional structure 490 of Escherichia |
| 5 | 3v7o | 4g50 | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5256280/ | Design of an expression system to enhance MBP-mediated crystallization | 2017 | T Jin, W Chuenchor, J Jiang, J Cheng, Y Li - Scientific , 2017 - ncbi.nlm.nih.gov | ... 25 , GST 26 , TRX 27 , green fluorescent protein (GFP) 28 ,29 , SUMO (pdb: 3V7O and 4G50 ...platform is increasingly appreciated 38 ,39 , the optimal sequence, length, and structure of the ...The death domain superfamily is a structural motif found in many proteins that are involved ... |
| 6 | 4wbs | - | https://scripts.iucr.org/cgi-bin/paper?ft5098 | The structure of lipopolysaccharide transport protein B (LptB) from Burkholderia pseudomallei | 2019 | G Pankov, A Dawson, WN Hunter- Section F: Structural Biology, 2019 - scripts.iucr.org | A single polypeptide from Paraburkholderia phymatum LptB ( PDB entry 4wbs ; Seattle Structural Genomics Center 2. The LptB subunit fold is conserved and displays no major conformational differences irrespective of whether the cofactor is present in the structure or not |
| 7 | 4odj | - | https://scripts.iucr.org/cgi-bin/paper?no5145 | Structure of a critical metabolic enzyme: S-adenosylmethionine synthetase from Cryptosporidium parvum | 2019 | J Ohren, GF Parungao, RE Viola- Section F: Structural Biology, 2019 - scripts.iucr.org | Vagin & Teplyakov, 2010) with the structure of C. hominus MetK ( PDB entry 4odj ) as the ordered in the presence of substrates, is disordered and was not modeled in this structure to form functional tetramers with D2 or 222 symmetry, as illustrated by EcoMetK ( PDB entry 1p7l |
| 8 | 3laa | 4lgo, 3s6l | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7688925/ | Non-adaptive evolution of trimeric autotransporters in Brucellaceae | 2020 | MR Rahbar, M Zarei, A Jahangiri, S Khalili- Frontiers in, 2020 - ncbi.nlm.nih.gov | domain from Haemophilus influenzae genome ( PDB ID:1S7M; Yeo et al., 2004); structure of the parallel beta-roll collagen-binding domain of Yersinia enterocolitica adhesin YadA ( PDB ID: 1P9H Batch analyzes of the dataset suggested the existence of a few structural domains |
| 9 | 3hzg | - | https://tel.archives-ouvertes.fr/tel-02165924/ | Synthse d'analogues nuclotidiques visant l'inhibition de la Thymidylate Synthase Flavine-Dpendante | 2018 | F Chevrier - 2018 - tel.archives-ouvertes.fr | PCF2 : gem-Difluoromthylphosphonate PDB : Protein data bank pH : Potentiel hydrogne 18 Page 20. 19 I. Les bactries : structures et mcanismes d'infection Schma 1 : Structure gnrale d'une bactrie. Cependant, elles possdent des attributs essentiels leur survie |
| 10 | 3rqi | - | http://pubs.acs.org/doi/full/10.1021/bi301004v | A Predicted Structure for the PixD-PixE Complex Determined by Homology Modeling, Docking Simulations, and a Mutagenesis Study | 2013 | S Ren, R Sato, K Hasegawa, H Ohta, S Masuda - Biochemistry, 2013 - ACS Publications | ... PixE Homology Modeling The amino acid sequence of PixE was obtained from the DNA DataBank of Japan (entry ... were bacterial response regulators (best 20 defined as those with the smallest E values; PDB entries 3LUF, 3N0R, 3GT7, 1QKK, 3KHT, 3RQI, 2ZQT, 2QZJ ... |