We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 7KM8 | 2021 | 2 |
| 6CUM | 2018 | 2 |
| 3E7D | 2008 | 2 |
| 3E5Y | 2008 | 2 |
| 7JFZ | 2020 | 2 |
| 5K9F | 2016 | 2 |
| 3D63 | 2008 | 2 |
| 4IWH | 2013 | 2 |
| 4J3G | 2013 | 2 |
| 4JGA | 2013 | 2 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 6ok4 | 4lsm, 4k9d | https://www.sciencedirect.com/science/article/pii/S0300908421000249 | Structure determination and analyses of the GAPDH from the parasite Schistosoma mansoni, the first one from a platyhelminth | 2021 | S Boreiko, M Silva, J Iulek- Biochimie, 2021 - Elsevier | The GAPDH’s structures selected for sequence alignment were from: Brugia malayi, Bmal - PDB ID: 4K9D ... and Chlamydia trachomatis, Ctra - PDB ID: 6OK4 [66] |
| 2 | 6wps | - | https://www.biorxiv.org/content/10.1101/2021.01.25.427846v1.abstract | SARS-CoV-2 receptor binding mutations and antibody mediated immunity. | 2021 | M Mejdani, K Haddadi, C Pham, R Mahadevan- BioRxiv, 2021 - biorxiv.org | 39 ( PDB : 7JMP), CV07- 250 ( PDB : 6XKQ), P2B-2F6 ( PDB : 7BWJ), CV07-270 ( PDB : 6XKP), BD-368-2 ( PDB : 7CHE), and S309 ( PDB : 6WPS ) 53 Laskowski, RA PDBsum: summaries and analyses of PDB structures Fig.1: Structure of SARS-CoV-2 RBD bound to ACE2 receptor |
| 3 | 4pfz | - | https://www.sciencedirect.com/science/article/pii/S0006291X19308988 | Structural insights into a maleylpyruvate hydrolase from sphingobium sp. SYK-6, a bacterium degrading lignin-derived aryls | 2019 | H Hong, H Seo, KJ Kim- Biochemical and biophysical research, 2019 - Elsevier | delta-isomerase from Mycobacterium smegmatis strain ATCC 700084 ( PDB code 4PFZ , 41% sequence The model building and structure refinement were performed as in SsMPH Apo type Mn 2+ -pyruvate have been deposited in the Protein Data Bank with PDB codes 6JVV |
| 4 | 4wec | - | http://www.biochemj.org/content/474/6/907.abstract | Binding of NADP+ triggers an open-to-closed transition in a mycobacterial FabG -ketoacyl-ACP reductase | 2017 | M Blaise, N Van Wyk, F Banres-Roquet - Biochemical , 2017 - biochemj.org | ... A BLAST analysis using the MSMEG_6753 primary sequence to query the protein databank shows that the crystal structures of Ralstonia sp. alcohol dehydrogenase [24] (PDB:4BMS), Bacillus subtilis FabG [18] (PDB:4NBU) and the uncharacterized SDR MSMEG_2598 (PDB:4WEC) from M. smegmatis (unpublished) possess the highest scores, sharing 42, 37 and 37% primary sequence identity with MSMEG_6753, respectively ... |
| 5 | 5vnx | 3qhx | https://www.sciencedirect.com/science/article/pii/S0022283620306033 | Crystallographic Snapshots of the Dunathan and Quinonoid Intermediates provide Insights into the Reaction Mechanism of Group II Decarboxylases | 2020 | SC Gayathri, N Manoj- Journal of Molecular Biology, 2020 - Elsevier | Previously, we reported the biochemical characterization and the crystal structure of an archaeal type-I transferase superfamily and displays the characteristic three-domain architecture of the PLP aldehyde bound form (apoMjDCPLP ALD , non-covalently bound, PDB ID: 3F9T |
| 6 | 3jst | - | https://www.sciencedirect.com/science/article/pii/S0141813020335261 | Role of tetrachloro-1, 4-benzoquinone reductase in phenylalanine hydroxylation system and pentachlorophenol degradation in Bacillus cereus AOA-CPS1 | 2020 | OA Aregbesola, A Kumar, MP Mokoena- International Journal of, 2020 - Elsevier | Three-dimensional structure and homology modelling of the protein were predicted by submitting the amino acid sequence at the SWISS-MODEL tool at The modelled PDB files were submitted to an online tool (PDBsum) for determining the structural summary [34]. 2.12 ... and sequence identity of 59%, followed by PCD/DCoH (PDB: 3JST) from Brucella melitensis, |
| 7 | 5dwn | - | http://jb.asm.org/content/199/13/e00125-17.short | Reclassification of the Specialized Metabolite Producer Pseudomonas mesoacidophila ATCC 31433 as a Member of the Burkholderia cepacia Complex | 2017 | EJ Loveridge, C Jones, MJ Bull, SC Moody - Journal of , 2017 - Am Soc Microbiol | ... protein [37], including conservation of the bleomycin-binding regions), phosphinothricinN-acetyltransferase (36% identical to phosphinothricin N-acetyltransferase from Brucella ovis[GenBank accession number WP_006155257; PDB accession number 5DWN], with significant ... |
| 8 | 3ek1 | 3i44 | http://www.sciencedirect.com/science/article/pii/S0009279712002773 | Potential monovalent cation-binding sites in aldehyde dehydrogenases | 2013 | L Gonz?lez-Segura, H Riveros-Rosas? - Chemico-biological Interactions, 2013 - Elsevier | ... Cation-binding sites. Family/organism, PDB code, Resolution (?), Monovalent cation in protein solution/crystallization solution, Intra, Inter, Central-cavity a. ... Brucella melitensis, 3EK1, 2.10, nr/(NH 4 ) 2 SO 4 1 M, Proposed (Water ? Na + ), Proposed (Water ? Na + ) i, No (Lys at 479 ... |
| 9 | 4k6f | - | https://repository.up.ac.za/handle/2263/62274 | Cloning, expression and molecular modeling of the anthocyanidin reductase (FaANR) gene during strawberry fruit development | 2017 | PC Mandave, AA Kuvalekar, NL Mantri, MA Islam - 2017 - repository.up.ac.za | on 3D structure of ANR obtained from homology modeling technique to check binding interaction of template molecule ( PDB ID: 4K6F ) with bound Their complex structure limits the com- mercial chemical synthesis and we are therefore highly re- liant on plants, especially |
| 10 | 3la9 | - | http://www.springerlink.com/index/M46X0Q11002X8755.pdf | Structure and biology of trimeric autotransporter adhesins | 2011 | A ?yskowski, JC Leo, A Goldman - Bacterial Adhesion, 2011 - Springer | ... The structures are identified by their PDB ID codes where avail- able. ... structure of Haemophilus HiaDB2; (c) 3emi: structure of Haemophilus Hia 307?442 non-adhesive domain; (d) 3emo: structure of transmembrane domain of Haemophilus Hia 973?1098; (e) 3la9: structure of ... |