We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 4N0W | 2013 | 2 |
| 6MWF | 2019 | 2 |
| 4N67 | 2014 | 2 |
| 6WNG | 2020 | 2 |
| 4NOZ | 2013 | 2 |
| 3U7J | 2011 | 2 |
| 6N1F | 2018 | 2 |
| 3U0F | 2011 | 2 |
| 6MWI | 2019 | 2 |
| 6NAE | 2019 | 2 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 5upg | - | https://www.sciencedirect.com/science/article/pii/S0141813018328204 | The inhibitory and binding studies of methyl-sulfone hydroxamate based inhibitors against LpxC from drug resistant Moraxella catarrhalis using biophysical | 2018 | A Sharma, V Kumar, S Pratap, P Kumar- International journal of biological, 2018 - Elsevier | Similarly, a crystal structure of LpxC from P. aeruginosa complexed with the LpxC-4 inhibitors (PDB ID: 5UPG) have also shown the interactions of ligand at these two sites. |
| 2 | 3pgz | - | http://link.springer.com/protocol/10.1007/978-1-62703-032-8_2 | Structural Diversity Based on Variability in Quaternary Association. A Case Study Involving Eubacterial and Related SSBs | 2012 | SM Arif, M Vijayan - Single-Stranded DNA Binding Proteins, 2012 - Springer | ... structures reported in the literature and/or the coordinates of which have been deposited in the Protein Data Bank (PDB) ( 17 ) form ... in the PDB, but the results are yet to be published: 1. Thermus thermophilus (TtSSB) (PDB code 2cwa). 2. Bartonella henselae (BhSSB) (3pgz). ... |
| 3 | 4yet | 4f2n | https://onlinelibrary.wiley.com/doi/abs/10.1002/minf.201900052 | Tropical and Subtropical Parasitic Diseases: Targets for a New Approach to Virtual Screening | 2019 | MJR Yunta, RC Dietrich- Molecular informatics, 2019 - Wiley Online Library | The most stable extended geometry was always used as the starting structure in all SODb2 (glycosomial), 2GOJ for Plasmodium Falci- parum Fe-SODb1 (cytosolic) and 4YET for Babesia Starting water molecules positions were those published in the corresponding PDB library |
| 4 | 3r8c | 3r20, 4die | https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0233689 | The crystal structures of Thermus thermophilus CMP kinase complexed with a phosphoryl group acceptor and donor | 2020 | R Mega, N Nakagawa, S Kuramitsu, R Masui- PloS one, 2020 - journals.plos.org | open form, CMP-bound closed form, ADP-CDP-Gd 3+ -, and CDP-bound forms at resolutions of 1.7, 2.2, 1.5, 1.6, and 1.7 , respectively (Table 1, Fig 1). Structural differences between (B) Superimposition of the overall structure of ligand-free form (gray; PDB code 3W90 ... and ligand-free form of CMPK from M. abscessus (dark gray; 3R8C). These structures were structurally aligned ... The ligand-free form of M. smegmatis CMPK (PDB code 3R20) is almost the same structure as M. abscessus CMPK. |
| 5 | 3d64 | 3n58 | http://scripts.iucr.org/cgi-bin/paper?S1399004715018659 | An enzyme captured in two conformational states: crystal structure of S-adenosyl-l-homocysteine hydrolase from Bradyrhizobium elkanii | 2015 | T Manszewski, K Singh, B Imiolczyk - Section D: Biological , 2015 - scripts.iucr.org | ... pseudomallei (Seattle Structural Genomics Center for Infectious Disease, unpublished work,PDB entry 3d64 ), Brucella melitensis (unpublished work, PDB entry 3n58 ... Here, we present thefirst crystal structure of SAHase from a nodulating bacterium, Bradyrhizobium ... |
| 6 | 4n0w | 4oh7, 4o5m, 4o5o, 4oo0, 4m0j, 4m9a | http://onlinelibrary.wiley.com/doi/10.1002/prot.25274/full | Princeton_TIGRESS 2.0: High refinement consistency and net gains through support vector machines and molecular dynamics in doubleblind predictions during the | 2017 | GA Khoury, J Smadbeck, CA Kieslich - Proteins: Structure, , 2017 - Wiley Online Library | ... The interface will e-mail the refined structure with a unique link to visualize the initial and refinedstructures in a Jmol environment, as well as analyze the changes in key structural features whichinclude relative GDT_TS, dDFIRE energy, and number of clashes. ... |
| 7 | 3ido | - | http://scripts.iucr.org/cgi-bin/paper?pu5380 | Cloning, purification, crystallization and preliminary X-ray analysis of two low-molecular-weight protein tyrosine phosphatases from Vibrio cholerae | 2012 | S Nath, R Banerjee, S Khamrui, U Sen - Acta Crystallographica Section F Structural Biology and Crystallization Communications, 2012 - scripts.iucr.org | ... Biol. 215, 403-410.] ) search for a homologous structure showed that the amino-acid sequence of VcLMWPTP-1 possesses the highest identity (43%) to that of protein tyrosine phosphatase from Entamoeba histolytica (PDB entry 3ido ; Seattle Structural Genomics Center for ... |
| 8 | 3ixc | - | http://www.sciencedirect.com/science/article/pii/S002228361300003X | PIM: Phase Integrated Method for Normal Mode Analysis of Biomolecules in a Crystalline Environment | 2013 | M Lu, J Ma - Journal of molecular biology, 2013 - Elsevier | ... There are totally 29 out of the 65 space groups in this case, shown in the leftmost column of Table 1. In the Protein Data Bank (PDB), 73.3% of the structures belong to this case. ... In the PDB, 24.0% of the structures belong to the case. ... |
| 9 | 3und | - | http://scripts.iucr.org/cgi-bin/paper?tt5043 | Structure of 2-keto-3-deoxy-D-manno-octulosonate-8-phosphate synthase from Pseudomonas aeruginosa | 2013 | SK Nelson, A Kelleher, G Robinson? - Acta Crystallographica Section F: Structural Biology and Crystallization Communications, 2013 - scripts.iucr.org | ... Biochemistry, 40, 6326-6334.] ), with 69% sequence similarity, Burkholderia pseudomallei (PDB entry 3und ; Seattle Structural Genomics Center for Infectious Disease, unpublished work), with 64% sequence identity, and Aquifex aeolicus (PDB entry 1fwt ; Ackerman & Gatti ... |
| 10 | 4g50 | 4ggq | http://www.sciencedirect.com/science/article/pii/S0968089616306320 | Development, synthesis and structureactivity-relationships of inhibitors of the macrophage infectivity potentiator (Mip) proteins of Legionella pneumophila and | 2016 | F Seufert, M Kuhn, M Hein, M Weiwad, M Vivoli - Bioorganic & Medicinal , 2016 - Elsevier | ... Structural comparison between BpMip and LpMip showed a high homology in the PPIase domain. ...A (left) and region B (right) of lead compound CJ168 (shown in orange in PDB structure 4G503 ). The ... In fact, from the BpMip crystal structures and the LpMip docking modes, the ... |