We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 3SF6 | 2011 | 2 |
| 4KGN | 2013 | 2 |
| 5U4S | 2017 | 2 |
| 5JAY | 2016 | 2 |
| 4I1U | 2013 | 2 |
| 3RRV | 2011 | 2 |
| 6MB0 | 2019 | 2 |
| 4LW8 | 2013 | 2 |
| 4H4G | 2012 | 2 |
| 4M16 | 2014 | 2 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3rr6 | 3qdf, 4pfz, 4maq | https://sfamjournals.onlinelibrary.wiley.com/doi/abs/10.1111/1462-2920.14844 | Sequence, structure and functionbased classification of the broadly conserved FAH superfamily reveals two distinct fumarylpyruvate hydrolase subfamilies | 2020 | H Hong, H Seo, W Park, KJ Kim- Environmental microbiology, 2020 - Wiley Online Library | This article is protected by copyright. All rights reserved. Page 24. uncharacterized protein from M. abscessus DSM 44196 ( PDB code 3RR6 , 36 % sequence identity) as a search model. The structure model was built using the WinCoot program (Emsley |
| 2 | 6wps | - | https://www.biorxiv.org/content/10.1101/2021.01.25.427846v1.abstract | SARS-CoV-2 receptor binding mutations and antibody mediated immunity. | 2021 | M Mejdani, K Haddadi, C Pham, R Mahadevan- BioRxiv, 2021 - biorxiv.org | 39 ( PDB : 7JMP), CV07- 250 ( PDB : 6XKQ), P2B-2F6 ( PDB : 7BWJ), CV07-270 ( PDB : 6XKP), BD-368-2 ( PDB : 7CHE), and S309 ( PDB : 6WPS ) 53 Laskowski, RA PDBsum: summaries and analyses of PDB structures Fig.1: Structure of SARS-CoV-2 RBD bound to ACE2 receptor |
| 3 | 4nps | - | https://www.pnas.org/content/118/12/e2023245118.short | Structural basis for selective AMPylation of Rac-subfamily GTPases by Bartonella effector protein 1 (Bep1) | 2021 | N Dietz, M Huber, I Sorg, A Goepfert- Proceedings of the, 2021 - National Acad Sciences | Skip to main content. Main menu. Home; Articles: Current; Special Feature Articles - Most Recent; Special Features; Colloquia; Collected Articles; PNAS Classics; List of Issues. Front Matter: Front Matter Portal; Journal Club. News: For |
| 4 | 2khp | - | http://www.mdpi.com/1420-3049/21/7/846/htm | An NMR-guided screening method for selective fragment docking and synthesis of a warhead inhibitor | 2016 | RB Khattri, DL Morris, CM Davis, SM Bilinovich - Molecules, 2016 - mdpi.com | ... The active site architecture of BrmGRX matches with the proposed GRX consensus active sitestructure which suggests the N ... Structures of target proteins were obtained from the Protein DataBank (PDB) [63]. The PBD code for BrmGRX is 2KHP and hGRX1 is 1JHB [19,64]. ... |
| 5 | 6bfu | - | https://www.nature.com/articles/s41467-024-49693-0 | Neutralizing antibodies reveal cryptic vulnerabilities and interdomain crosstalk in the porcine deltacoronavirus spike protein | 2024 | W Du, O Debski-Antoniak, D Drabek- Nature, 2024 - nature.com | the antigenic structure of the PDCoV S protein. Through functional and structural characterization The PDB file of PDCoV spike protein ( PDB ID: 6BFU ) and SARS-CoV-2 spike protein ( |
| 6 | 4g67 | 4f3n | https://www.degruyter.com/view/j/bchm.2019.400.issue-11/hsz-2019-0182/hsz-2019-0... | Exceptionally versatilearginine in bacterial post-translational protein modifications | 2019 | J Lassak, F Koller, R Krafczyk, W Volkwein- Biological chemistry, 2019 - degruyter.com | Post-translational modifications (PTM) are the evolutionary solution to challenge and extend the boundaries of genetically predetermined proteomic diversity. As PTMs are highly dynamic, they also hold an enormous regulatory potential. The Mitochondrial Dysfunction protein A (MidA), a PRMT from Dictyostelium discoideum shows structural similarities to the putative protein Q6N1P6 (PDB: 1ZKD) of Rhodopseudomonas palustris and two other hypotheticals (PDB: 4F3N, 4G67) (Baugh et al., 2013) from Burkholderia |
| 7 | 3gvg | - | http://www.sciencedirect.com/science/article/pii/S0300908412002696 | Crystal structures of triosephosphate isomerase from methicillin resistant< i> Staphylococcus aureus</i> MRSA252 provide structural insights into novel modes of ligand binding and unique conformations of catalytic loop | 2012 | S Mukherjee, A Roychowdhury, D Dutta, AK Das - Biochimie, 2012 - Elsevier | ... Structural homologues to SaTIM in PDB were searched by the BLASTP server [46 ... sequence alignment of amino acid residues of SaTIM (3M9Y) with TIM from Bacillus stearothermophilus (2BTM), Thermotoga maritima (1B9B), Mycobacterium tuberculosis (3GVG), Vibrio marinus ... |
| 8 | 3kjr | - | http://pubs.acs.org/doi/abs/10.1021/ci300349s | Are homology models sufficiently good for free-energy simulations? | 2012 | S Genheden - Journal of chemical information and modeling, 2012 - ACS Publications | ... factor IXa (pdb code: 1rfn(36)) with 44% sequence identity and protein C (pdb code: 1aut ... Suitable template proteins for dhfr were found by a FASTA search(38) of the protein databank. ... The results of the FASTA search are summarized in Table 1. Finally, 2bl9, 3kjr, and 2oip were ... |
| 9 | 3ndn | - | http://mic.sgmjournals.org/content/160/Pt_8/1571.short | Bacterial methionine biosynthesis | 2014 | MP Ferla, WM Patrick - Microbiology, 2014 - Soc General Microbiol | ... 2). Its presence in P. aeruginosa and P. putida has been discussed (Foglino et al., 1995; Alaminos & Ramos, 2001), and an unpublished structure of a Mycobacterium tuberculosis O-succinylhomoserine thiolase has been deposited in the Protein Data Bank (PDB ID 3NDN). ... |
| 10 | 5vn4 | - | https://febs.onlinelibrary.wiley.com/doi/abs/10.1111/febs.14481 | Crystal structures of APRT from Francisella tularensis an NHN hydrogen bond imparts adenine specificity in adenine phosporibosyltransferases | 2018 | GC Pavithra, UA Ramagopal- The FEBS journal, 2018 - Wiley Online Library | [2]. The structure along with core PRPP binding domain also possesses a catalytic loop It should be noted that the overall architecture of FtAPRT is very similar to that of other canonical APRTs ( PDB -1QB7) [4] and Trypanosoma brucei ( PDB - 5VN4 ) with a C-terminal extension |