We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 8DOR | 2022 | 2 |
| 4J3G | 2013 | 2 |
| 3HN6 | 2009 | 2 |
| 7SYC | 2021 | 1 |
| 8SBO | 2023 | 1 |
| 8DUR | 2022 | 1 |
| 5TQI | 2016 | 1 |
| 6CKQ | 2018 | 1 |
| 6NS0 | 2019 | 1 |
| 5BT9 | 2015 | 1 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3nrr | - | http://onlinelibrary.wiley.com/doi/10.1111/febs.13662/full | Structural analysis of dihydrofolate reductases enables rationalization of antifolate binding affinities and suggests repurposing possibilities | 2016 | A Bhosle, N Chandra - FEBS Journal, 2016 - Wiley Online Library | ... due to conservation of overall structure makes it feasible to study variation at each ... C9 (P.falciparum:Tyr 57 and Phe 223; PDB ID: 1J3I), B.bovis (Phe 40 and Phe 161; PDB ID: 3NRR), C.hominis(Phe 35 and Phe 172; PDB ID: 3HJ3) and E.faecalis (Phe 30 and Tyr ... |
| 2 | 4ol9 | - | http://pubs.acs.org/doi/abs/10.1021/acs.biochem.5b00174 | Evidence of kinetic cooperativity in dimeric ketopantoate reductase from Staphylococcus aureus. | 2015 | JE Sanchez, PG Gross, RW Goetze, RM Walsh… - Biochemistry, 2015 - ACS Publications | ... the dimeric assembly of S. aureus KPR is conserved in the enzymes from Ralstonia eutropha, Ralstonia solanacearum, Mycobacterium tuberculosis, Enterococcus faecalis, Methylococcus capsulatus, and Bacillus subtilis (PDB entries 3HWR, 3GHY, 4OL9, 2EW2, 3I83, and 3EGO, respectively), despite low sequence identity ranging from 20−31% ... |
| 3 | 4yet | 4f2n | https://onlinelibrary.wiley.com/doi/abs/10.1002/minf.201900052 | Tropical and Subtropical Parasitic Diseases: Targets for a New Approach to Virtual Screening | 2019 | MJR Yunta, RC Dietrich- Molecular informatics, 2019 - Wiley Online Library | The most stable extended geometry was always used as the starting structure in all SODb2 (glycosomial), 2GOJ for Plasmodium Falci- parum Fe-SODb1 (cytosolic) and 4YET for Babesia Starting water molecules positions were those published in the corresponding PDB library |
| 4 | 3enk | - | http://www.sciencedirect.com/science/article/pii/S0944501313001407 | Functional characterization and transcriptional analysis of galE gene encoding a UDP-galactose 4-epimerase in Xanthomonas campestris pv. campestris | 2014 | CT Li, CT Liao, SC Du, YP Hsiao, HH Lo… - Microbiological …, 2014 - Elsevier | ... based on the detection of hydrogen bonds defined by an electrostatic criterion using the Dictionaryof Protein Secondary Structure database method obtained from PDBsum database. Thethree-dimensional structural model of Xcc GalE was based on E. coli GalE (PDB ID 1XEL ...B. pseudomallei (Bps-GalE, PDB code 3ENK); B. anthracis (Ban-GalE, PDB code 2C20); and T. thermophilus (Tth-GalE, PDB code 2P5U)... |
| 5 | 3tcq | - | https://www.mdpi.com/1422-0067/24/7/6298 | Cheminformatics-Based Study Identifies Potential Ebola VP40 Inhibitors | 2023 | E Broni, C Ashley, J Adams, H Manu, E Aikins- International Journal of, 2023 - mdpi.com | Modeller generated five models using the 3D structures of 3TCQ and 7K5L as templates. structure of the VP40 with PDB ID 1ES6 as the parent template for modelling. 1ES6s structure |
| 6 | 3m1x | 3i3f, 3m4s, 3mqw | https://scripts.iucr.org/cgi-bin/paper?ft5116 | Crystal structure of a hypothetical protein from Giardia lamblia | 2022 | DK Beard, S Bristol, K Cosby, A Davis- Section F: Structural, 2022 - scripts.iucr.org | One of these proteins is a putative endonuclease from Entamoeba histolytica ( PDB entries 3mqw, 3m1x and 3m4s; 36% sequence identity and 56% coverage; Seattle Structural |
| 7 | 4ege | - | http://www.sciencedirect.com/science/article/pii/S1570963916302278 | Crystal structure and biochemical investigations reveal novel mode of substrate selectivity and illuminate substrate inhibition and allostericity in a subfamily of Xaa-Pro | 2017 | VN Are, A Kumar, S Kumar, VD Goyal, B Ghosh - et Biophysica Acta (BBA , 2017 - Elsevier | ... are lacking with literature reports of either only structural data (PDB entries; 1WN1, 1WY2, 3Q6D,2IW2, 4EGE) or only ... for this was prepared by Chainsaw [26] using the XPDxc protein sequenceand the structure of a putative XPD from Thermococcus sibiricus (PDB: 4FKC) [8 ... |
| 8 | 3ndn | - | http://mic.sgmjournals.org/content/160/Pt_8/1571.short | Bacterial methionine biosynthesis | 2014 | MP Ferla, WM Patrick - Microbiology, 2014 - Soc General Microbiol | ... 2). Its presence in P. aeruginosa and P. putida has been discussed (Foglino et al., 1995; Alaminos & Ramos, 2001), and an unpublished structure of a Mycobacterium tuberculosis O-succinylhomoserine thiolase has been deposited in the Protein Data Bank (PDB ID 3NDN). ... |
| 9 | 3hhj | - | http://www.sciencedirect.com/science/article/pii/S0006291X12004056 | Insights into substrate recognition by the< i> Escherichia coli</i> Orf135 protein through its solution structure | 2012 | K Kawasaki, T Kanaba, M Yoneyama? - Biochemical and Biophysical Research Communications, 2012 - Elsevier | ... Finally, this study should contribute towards a further understanding of the substrate specificity of Nudix enzymes. For example, the DALI server showed the highest similarity score of 18.9 to the recently published Nudix enzyme (PDB:3hhj) [27]. ... |
| 10 | 3kjr | - | http://pubs.acs.org/doi/abs/10.1021/ci300349s | Are homology models sufficiently good for free-energy simulations? | 2012 | S Genheden - Journal of chemical information and modeling, 2012 - ACS Publications | ... factor IXa (pdb code: 1rfn(36)) with 44% sequence identity and protein C (pdb code: 1aut ... Suitable template proteins for dhfr were found by a FASTA search(38) of the protein databank. ... The results of the FASTA search are summarized in Table 1. Finally, 2bl9, 3kjr, and 2oip were ... |