We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 4EMB | 2012 | 2 |
| 7KN1 | 2020 | 2 |
| 4EGQ | 2012 | 2 |
| 7L3Q | 2020 | 2 |
| 3ICO | 2009 | 2 |
| 7LXI | 2021 | 2 |
| 5KAK | 2016 | 2 |
| 3P4T | 2010 | 2 |
| 4EFZ | 2012 | 2 |
| 7KNP | 2020 | 2 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 4n0w | 4oh7, 4o5m, 4o5o, 4oo0, 4m0j, 4m9a | http://onlinelibrary.wiley.com/doi/10.1002/prot.25274/full | Princeton_TIGRESS 2.0: High refinement consistency and net gains through support vector machines and molecular dynamics in doubleblind predictions during the | 2017 | GA Khoury, J Smadbeck, CA Kieslich - Proteins: Structure, , 2017 - Wiley Online Library | ... The interface will e-mail the refined structure with a unique link to visualize the initial and refinedstructures in a Jmol environment, as well as analyze the changes in key structural features whichinclude relative GDT_TS, dDFIRE energy, and number of clashes. ... |
| 2 | 4l82 | - | https://www.sciencedirect.com/science/article/pii/S2405844019358530 | Simulation-based protein engineering of R. erythropolis FMN oxidoreductase (DszD) | 2019 | R Fallahzadeh, B Bambai, K Esfahani, AA Sepahi- Heliyon, 2019 - Elsevier | their PDB information, the multiple alignments of these 22 PDB files was done with the DszD. pdb (Fig 1. Predicted three dimensional structure for wild-type DszD enzyme residues (Asn or Ile residue instead of Ala79) were presented on the 3K88 and 4L82 homologous proteins |
| 3 | 3o0m | - | http://www.sciencedirect.com/science/article/pii/S002228361100492X | Structural Insights into the Novel Diadenosine 5′,5‴-P1,P4-Tetraphosphate Phosphorylase from Mycobacterium tuberculosis H37Rv | 2011 | S Mori, K Shibayama, JI Wachino, Y Arakawa - Journal of Molecular Biology, 2011 - Elsevier | ... Homo sapiens fragile HIT protein [Fhit; Protein Data Bank (PDB) IDs: 6FIT and 1FHI; Z-score = 16.1 and 15.8, respectively], which is a HIT family Ap n A hydrolase; [11] and [12] Zn-bound HIT family protein from Mycobacterium smegmatis (MSMEG5028; PDB ID: 3O0M; Z-score ... |
| 4 | 4g50 | 4ggq | http://www.sciencedirect.com/science/article/pii/S0968089616306320 | Development, synthesis and structureactivity-relationships of inhibitors of the macrophage infectivity potentiator (Mip) proteins of Legionella pneumophila and | 2016 | F Seufert, M Kuhn, M Hein, M Weiwad, M Vivoli - Bioorganic & Medicinal , 2016 - Elsevier | ... Structural comparison between BpMip and LpMip showed a high homology in the PPIase domain. ...A (left) and region B (right) of lead compound CJ168 (shown in orange in PDB structure 4G503 ). The ... In fact, from the BpMip crystal structures and the LpMip docking modes, the ... |
| 5 | 4f36 | 4fky, 4f4a, 4fkx, 4p8r | http://www.mdpi.com/1420-3049/21/10/1389/htm | The Potential of Secondary Metabolites from Plants as Drugs or Leads against Protozoan Neglected DiseasesPart III: In-Silico Molecular Docking | 2016 | IV Ogungbe, WN Setzer - Molecules, 2016 - mdpi.com | ... accessibilities: (1) in most cases the protein is modeled as a rigid structure without flexibility;(2 ... compounds that may themselves function as efficacious drugs, may serve as lead structuresfor chemical modification and optimization, or provide structural templates for de ... |
| 6 | 6tys | - | https://www.nature.com/articles/s41594-025-01598-2 | A nanobody-based therapeutic targeting Nipah virus limits viral escape | 2025 | A Isaacs, GV Nieto, X Zhang, N Modhiran- Nature Structural &, 2025 - nature.com | Data Bank ( PDB ) 5EVM) and other antibody-bound NiV F structures ( PDB 6TYS and 7UPD) to a previously determined cryo-EM structure of apo F ( PDB 8DNG), which faces inward |
| 7 | 6uhw | - | https://arxiv.org/abs/2507.14156 | All-atom inverse protein folding through discrete flow matching | 2025 | K Yi, K Jamali, SHW Scheres- arXiv preprint arXiv:2507.14156, 2025 - arxiv.org | structures for the sequences generated by both ADFLIP and LigandMPNN. We assessed structural similarity to the reference structure from the PDB scores from the structure prediction ( |
| 8 | 3eg4 | - | http://dx.plos.org/10.1371/journal.pone.0031133 | Tetrahydrodipicolinate N-Succinyltransferase and Dihydrodipicolinate Synthase from Pseudomonas aeruginosa: Structure Analysis and Gene Deletion | 2012 | R Schnell, W Oehlmann, T Sandalova, Y Braun? - PloS one, 2012 - dx.plos.org | ... In addition, the coordinates for DapD from Campylobacter jejuni (2RIJ), Enterococcus feacalis (3CJ8), Brucella melitensis (3EG4), and Yersinia ... model of the trimer of the putative tetrahydropyridine-2-carboxylate N-succinyltransferase from Campylobacter jejuni (PDB code ... |
| 9 | 6q06 | - | https://academic.oup.com/femsre/advance-article-abstract/doi/10.1093/femsre/fuaa... | Molecular diversity of coronavirus host cell entry receptors | 2020 | JK Millet, JA Jaimes, GR Whittaker- FEMS microbiology reviews, 2020 - academic.oup.com | boxes indicate genes encoding accessory proteins (ns2, ns4a, ns4b and ns5a), while green boxes indicate structural proteins B) Representative structure of coronavirus protein in pre-fusion (S1 and S2 subunits, PDB 3JCL) and post-fusion (S2 subunit, PDB 6B3O) conformations ...MERS-CoV NTD (PDB 6Q06), which binds sialosides with a preference for α2,3-linked sialic acids, |
| 10 | 3ndn | - | http://mic.sgmjournals.org/content/160/Pt_8/1571.short | Bacterial methionine biosynthesis | 2014 | MP Ferla, WM Patrick - Microbiology, 2014 - Soc General Microbiol | ... 2). Its presence in P. aeruginosa and P. putida has been discussed (Foglino et al., 1995; Alaminos & Ramos, 2001), and an unpublished structure of a Mycobacterium tuberculosis O-succinylhomoserine thiolase has been deposited in the Protein Data Bank (PDB ID 3NDN). ... |