We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 4JXJ | 2013 | 1 |
| 5J92 | 2016 | 1 |
| 8G0T | 2023 | 1 |
| 6D9N | 2018 | 1 |
| 6E54 | 2019 | 1 |
| 6MJ9 | 2018 | 1 |
| 6AN0 | 2017 | 1 |
| 6UM4 | 2019 | 1 |
| 3V7N | 2012 | 1 |
| 3SVT | 2011 | 1 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3ido | 3jvi | https://www.sciencedirect.com/science/article/pii/S1570963918302012 | Vibrio cholerae LMWPTP-2 display unique surface charge and grooves around the active site: Indicative of distinctive substrate specificity and scope to design specific | 2019 | S Chatterjee, S Nath, B Ghosh, U Sen- Biochimica et Biophysica Acta (BBA, 2019 - Elsevier | The surface properties of VcLMWTP-1, although have some distinct features, resembles closely to that of E. histolytica LMWPTP ( PDB : 3IDO ) This closure at the P-loop is also evident from the structural alignment with an 'open structure ' of apo-MPtpA ( PDB : 2LUO) [41] to the |
| 2 | 4g6z | 4gri | http://scripts.iucr.org/cgi-bin/paper?S2053230X14010723 | Preliminary X-ray crystallographic analysis of an engineered glutamyl-tRNA synthetase from Escherichia coli | 2014 | N Chongdar, S Dasgupta, AB Datta - Section F: Structural , 2014 - scripts.iucr.org | ... S. & Yokoyama, S. (2010). Acta Cryst. D66, 813-820.] ). In addition, crystal structures of GluRS from Burkholderia thailandensis (PDB entry 4g6z ; Baugh et al., 2013 [Baugh, L. et al. (2013). PLoS One, 8, e53851.] ) and Borrelia ... |
| 3 | 2lbb | - | http://www.sciencedirect.com/science/article/pii/S0141813017301216 | Lipid membranes and acyl-CoA esters promote opposing effects on acyl-CoA binding protein structure and stability | 2017 | MC Micheletto, LFS Mendes, LGM Basso - International Journal of , 2017 - Elsevier | ... Other secondary structures such as loops and disordered conformations contribute to the remaining 37%, whose values are consistent with the available structures of ACBP homologues in the protein data bank (PDB ID 2ABD, 3FP5 and 2LBB). Incubation with OCoA does not change the CD spectrum of CnACBP... |
| 4 | 3lgj | 3pgz | https://patents.google.com/patent/US20180179500A1/en | Modified enzymes | 2018 | AJ Heron, RV Bowen, M Bruce- US Patent App. 15, 2018 - Google Patents | In order to assess whether a suitable protein structure exists to use as a template to build a protein model, a search is performed on the protein data bank ( PDB ) database The sequence alignment and template structure are then used to produce a structural model of the The polynucleotide binding motif may be selected from any of those shown in Table 5 below. Bartonella 3LGJ, Q6G302 homo-tetramer |
| 5 | 4h51 | 4w5k, 3meb | http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0158402 | Structural Insights into a Novel Class of Aspartate Aminotransferase from Corynebacterium glutamicum | 2016 | HF Son, KJ Kim - PloS one, 2016 - journals.plos.org | ... A) RMSD of reported AspAT structures were analyzed. PDB code 1SPA; Escherichia coli, 7AAT; Gallus gallus (cytosolic), 2CST; Gallus gallus (mitochondrial), 3PD6; Mus musculus, 4W5K; Trypanosoma brucei, 1AJR; Sus scrofa, 3MEB; Gaiardia lamblia, 1YAA; Saccharomyces cerevisiae, 4H51; Leishmania major, 3K7Y; Plasmodium falciparum, ... |
| 6 | 3e5y | - | http://link.springer.com/article/10.1007/s12038-015-9554-0 | Analysis of coreperiphery organization in protein contact networks reveals groups of structurally and functionally critical residues | 2015 | AE Isaac, S Sinha - Journal of biosciences, 2015 - Springer | ... residues are in the innermost cores, suggesting that the network core is critically important in maintaining the structural stability of ... 2.1 Protein structure analysis. ... set of 66 non-redundant protein structures obtained from the Protein Data Bank ( http://www.rcsb.org/pdb ) that include ... For the exceptions, viz., proteins with PDB ids 1a30, 1aac, 1auw, 1cbr, 1vl4, 3e5y and 3js3, we verified that those proteins among this group ( |
| 7 | 3ke1 | - | http://pubs.acs.org/doi/full/10.1021/jm3016816 | Torsion Angle Preferences in Druglike Chemical Space: A Comprehensive Guide | 2013 | C Sch?rfer, T Schulz-Gasch, HC Ehrlich? - Journal of medicinal ?, 2013 - ACS Publications | ... The growing number of entries in the Cambridge Structural Database (CSD)(19) and the ProteinData Bank (PDB)(20) allow derivation of more and more reliable and specific rules, and efficient tools exist to do this.(21, 22) Here we present ... PDB entry 3ke1(39) exemplifies ... |
| 8 | 6nbo | - | https://www.sciencedirect.com/science/article/pii/S0022286021007304 | Synthesis and investigation of heterocyclic systems as pharmacological agents with conformational study and surface activity | 2021 | R El-Sayed, I Althagafi, M Morad, SM El-Bahy- of Molecular Structure, 2021 - Elsevier | The structure of recent products was illustrated by IR and 1 HNMR spectra a) and virtual simulation was accomplished upon harmful pathogen-protein as co-crystalline PDB file 3coi, 5ahi, 6nbo and 6ocr co-crystal proteins obtained from Protein Database (RCSB PDB : Homepage |
| 9 | 8dp2 | - | https://www.nature.com/articles/s41467-024-45632-1 | Poly--glutamylation of biomolecules | 2024 | G Bashiri, EMM Bulloch, WR Bramley- Nature, 2024 - nature.com | To produce an FPGS ligand model, MurD, FolC, and FPGS crystal structure coordinates (2UAG, 4UAG, 8DP2, 1W78, and 2VOR) were downloaded from the Protein Data Bank ... structures were overlaid using COOT and appropriate ligands appended to the FPGS structure as indicated by structural and intermolecular contacts in PDB structures 8DP2 and 4UAG, |
| 10 | 6d9y | - | https://www.nature.com/articles/s41598-024-65627-8 | Crystal structure of l-2-keto-3-deoxyfuconate 4-dehydrogenase reveals a unique binding mode as a -furanosyl hemiketal of substrates | 2024 | M Akagashi, S Watanabe, S Kwiatkowski, J Drozak- Scientific Reports, 2024 - nature.com | Although the crystal structure of l-KDRDH was unavailable, the closest related structure in the PDB , the hypothetical SDR protein from Burkholderia phymatum ( 6D9Y ; not yet published) |