We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 6BN2 | 2018 | 1 |
| 5TRW | 2016 | 1 |
| 8SBW | 2023 | 1 |
| 3LV0 | 2010 | 1 |
| 4EM6 | 2012 | 1 |
| 8DQB | 2022 | 1 |
| 3NG3 | 2010 | 1 |
| 6OEW | 2019 | 1 |
| 6D6J | 2018 | 1 |
| 3LNC | 2010 | 1 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3sdo | - | http://onlinelibrary.wiley.com/doi/10.1002/prot.25267/full | Crystal structure of dibenzothiophene sulfone monooxygenase BdsA from Bacillus subtilis WUS2B | 2017 | M Okai, WC Lee, LJ Guan, T Ohshiro - Proteins: Structure, , 2017 - Wiley Online Library | ... Overall structure. ... BdsA also shows structural similarities with the following proteins: putativemonooxygenase Ytnj (PDB ID: 1TVL; Q-score 0.60, not published), nitrilotriacetatemonooxygenase NmoA (PDB ID: 3SDO; Q-score 0.57, not published), EDTA monooxygenase ... |
| 2 | 4lgv | - | http://pubs.acs.org/doi/abs/10.1021/acscatal.6b03440 | Substrate Channeling in an Artificial Metabolon: A Molecular Dynamics Blueprint for an Experimental Peptide Bridge | 2017 | Y Liu, DP Hickey, JY Guo, E Earl, S Abdellaoui - ACS , 2017 - ACS Publications | Figure 3. (A) Illustration of the proposed channeling complex using a poly(lysine) bridge as an electrostatic surface between hexokinase (HK; PDB 3VF6) and glucose-6-phosphate dehydrogenase (G6PDH; PDB 4LGV). |
| 3 | 3cxk | - | http://onlinelibrary.wiley.com/doi/10.1002/pmic.201300357/full | Unraveling the specificities of the different human methionine sulfoxide reductases | 2014 | E Vandermarliere, B Ghesquire, V Jonckheere - , 2014 - Wiley Online Library | ... In a first step, all human protein structures determined by X-ray crystallography were retrieved from the Protein Data Bank (PDB) [30]. ... With the aid of a BLAST search [33] against the PDB, the possible templates were shortlisted and PDB-entry 3CXK [34] was chosen as a ... |
| 4 | 3i3r | - | http://pubs.acs.org/doi/abs/10.1021/acsinfecdis.6b00181 | Structure-Based Targeting of Orthologous Pathogen Proteins Accelerates Antiparasitic Drug Discovery | 2017 | V Jain, A Sharma, G Singh, M Yogavel - ACS Infectious , 2017 - ACS Publications | ... Structures for dihydrofolate reductase (DHFR) inhibitors pyrimethamine, methotrexate, and trimetrexate that are active against P. falciparum, T. brucei, and T. cruzi, respectively. (B) DHFR domain architectures and active site residues are similar in many pathogens: Trypanosoma cruzi (PDB: 3HBB), Cryptosporidium hominis (PDB: 1QZF), Trypanosoma brucei (PDB: 3QFX), Babesia bovis (PDB: 3I3R),. ... |
| 5 | 4i1i | 4h7p | https://www.arca.fiocruz.br/handle/icict/34553 | Anlise de aspectos estruturais em imunoinformtica utilizando candidatos vacinais contra Leishmaniose que foram selecionados usando vacinologia reversa. | 2018 | JPL Velloso - 2018 - arca.fiocruz.br | Considering the importance of protein structure in immunological interactions and in vaccine infantum, protein modeling, molecular docking, structural protein disorder. Page 11. LISTA DE QUADROS NCBI - National Center for Biotechnology Information PDB - Protein Data Bank |
| 6 | 4n5f | - | http://www.jbc.org/content/293/5/1702.short | Structural basis for substrate specificity of methylsuccinyl-CoA dehydrogenase, an unusual member of the acyl-CoA dehydrogenase family | 2018 | T Schwander, R McLean, J Zarzycki, TJ Erb- Journal of Biological, 2018 - ASBMB | The structure was solved using molecular replacement using the Phaser-MR and AutoBuild programs of the Phenix software package (31). The structure of a putative acyl-CoA dehydrogenase (PDB code 4N5F; 26.5% sequence identity) served as a search model for the molecular replacement. |
| 7 | 6n38 | - | https://www.frontiersin.org/articles/10.3389/fmicb.2019.01615/abstract | Baseplate component TssK and spatio-temporal assembly of T6SS in Pseudomonas aeruginosa | 2019 | D Liebl, M Robert-Genthon, V Job, V Cogoni- Frontiers in, 2019 - frontiersin.org | TssE is the structural homolog of the T4 phage baseplate components gp25 (Leiman et al To confirm that TssK and TssE assemble into the same spot-like structure we generated and Mekalanos, 2012; Vettiger and Basler, 2016), very low number of TssB- structures were seen... The TssK oligomers disassemble upon action of PppA (shown in dashed lines). Stoichiometry (TssK3)2(TssF2/TssG) in accordance with cryo-EM structure (PDB 6N38) is shown. |
| 8 | 6c9e | - | https://www.biorxiv.org/content/10.1101/2020.05.24.113720v1.abstract | Discovery and characterization of a novel family of prokaryotic nanocompartments involved in sulfur metabolism | 2020 | RJ Nichols, B LaFrance, NR Phillips, LM Oltrogge- bioRxiv, 2020 - biorxiv.org | additional density for the holo-SrpI with a 243 homologous cysteine desulfurase dimer docked in ( pdb : 6c9e ) the first Family 2 encapsulin structure and is 267 the highest resolution structure for an Given the structural 271 similarity of the entire shell, it is unsurprising that the SrpI |
| 9 | 3nf4 | - | http://pubs.acs.org/doi/full/10.1021/bi4002979 | Mycobacterium tuberculosis Utilizes a Unique Heterotetrameric Structure for Dehydrogenation of the Cholesterol Side Chain | 2013 | ST Thomas, NS Sampson - Biochemistry, 2013 - ACS Publications | ... 16) FAD binding and CoA binding in published ACAD Protein Data Bank (PPDB) structures ... between FAD and several ACADs in reported crystal structures (PDB entry in ... 2WBI) and bacterial ACADS from Megsphaera elsdenii (1BUC) and Mycobacterium thermoresistibile (3NF4 ... |
| 10 | 4yl5 | - | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7093009/ | Essential Metabolic Routes as a Way to ESKAPE from Antibiotic Resistance | 2020 | ALC Barra, CD Lvia de Oliveira, LG Moro- Frontiers in Public, 2020 - ncbi.nlm.nih.gov | ID 2I5B (23)], Thermus thermophilus ( PDB ID 1UB0), A. baumannii ( PDB ID 4YL5 ), Bacteroides thetaiotaomicron tuberculosis (3O63), and for the bifunctional enzyme from Candida glabrata [ PDB IDs 3NL2 No crystal structure of an ESKAPE pathogen, ThiE, is available to date |