We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 7SOE | 2021 | 2 |
| 5W15 | 2017 | 2 |
| 4N0W | 2013 | 2 |
| 4F83 | 2012 | 2 |
| 2LXF | 2012 | 2 |
| 3EZ4 | 2008 | 2 |
| 5VCP | 2017 | 2 |
| 5VML | 2017 | 2 |
| 8DOR | 2022 | 2 |
| 4NOZ | 2013 | 2 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 4lgv | - | http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0152403 | Determinants of Cofactor Specificity for the Glucose-6-Phosphate Dehydrogenase from Escherichia coli: Simulation, Kinetics and Evolutionary Studies | 2016 | M Fuentealba, R Muoz, P Maturana, A Krapp - PloS one, 2016 - journals.plos.org | ... Four additional G6PDH sequences were included: those from Mycobacterium avium(Actinobacteria), whose structure is known (PDB ID 4LGV), from Borreliaburgdorferi (Spirochaetes),Synechocisits (Cyanobacteria) and Chlamydophila pneumoniae (Chlamydiae). ... |
| 2 | 3uam | - | https://academic.oup.com/plcell/advance-article-abstract/doi/10.1093/plcell/koab... | Effectors With Chitinase Activity (EWCAs), a family of conserved, secreted fungal chitinases that suppress chitin-triggered immunity | 2021 | J Martnez-Cruz, D Romero, J Hierrezuelo- The Plant, 2021 - academic.oup.com | Phytopathogenic fungi secrete effectors with chitinase activity to break down immunogenic chitin oligomers and suppress plant immunity. The other models are 3D models of crystallized proteins from Hypocrea jecorina (2VTC, glycoside hydrolase family 61 member), A. oryzae (4MAH, lytic poly- saccharide monooxygenase), E. faecalis (4A02, chitinase), and Burkholderia pseudomallei (3UAM, chitin-binding domain) |
| 3 | 3rr2 | - | http://onlinelibrary.wiley.com/doi/10.1002/minf.201200174/full | Computational Insights into the Mechanism of Inhibition of OASS-A by a Small Molecule Inhibitor | 2013 | A Bruno, L Amori, G Costantino - Molecular Informatics, 2013 - Wiley Online Library | ... Table 1. List of OASS structures reported in PDB. PDB. Resolution. Organism. 1OAS. 2.20. Salmonella typhimurium. 1D6S. 2.30. Salmonella typhimurium. 1FCJ. ... 3IQH. 1.90. Haemophilus influenzae. 3IQI. 1.70. Haemophilus influenzae. 3RR2. 1.95. Mycobacterium marinum. 3T4P ... |
| 4 | 6q06 | - | https://academic.oup.com/femsre/advance-article-abstract/doi/10.1093/femsre/fuaa... | Molecular diversity of coronavirus host cell entry receptors | 2020 | JK Millet, JA Jaimes, GR Whittaker- FEMS microbiology reviews, 2020 - academic.oup.com | boxes indicate genes encoding accessory proteins (ns2, ns4a, ns4b and ns5a), while green boxes indicate structural proteins B) Representative structure of coronavirus protein in pre-fusion (S1 and S2 subunits, PDB 3JCL) and post-fusion (S2 subunit, PDB 6B3O) conformations ...MERS-CoV NTD (PDB 6Q06), which binds sialosides with a preference for α2,3-linked sialic acids, |
| 5 | 3dah | - | http://link.springer.com/article/10.1007/s00792-014-0726-x | Structure of dimeric, recombinant Sulfolobus solfataricus phosphoribosyl diphosphate synthase: a bent dimer defining the adenine specificity of the substrate ATP | 2015 | RW Andersen, LL Leggio, B Hove-Jensen, A Kadziola - Extremophiles, 2015 - Springer | ... 1 3 structure of PRPP synthase of the thermophilic, metha- nogenic archaeon M. jannaschii istetrameric and appears to be built by two dimers ... 2007), and the Gram-negative Betaproteobacterium Burkholderia (Pseudomonas) pseudomallei (PDB code 3DAH) have hex ... |
| 6 | 3o0m | - | http://www.sciencedirect.com/science/article/pii/S002228361100492X | Structural Insights into the Novel Diadenosine 5′,5‴-P1,P4-Tetraphosphate Phosphorylase from Mycobacterium tuberculosis H37Rv | 2011 | S Mori, K Shibayama, JI Wachino, Y Arakawa - Journal of Molecular Biology, 2011 - Elsevier | ... Homo sapiens fragile HIT protein [Fhit; Protein Data Bank (PDB) IDs: 6FIT and 1FHI; Z-score = 16.1 and 15.8, respectively], which is a HIT family Ap n A hydrolase; [11] and [12] Zn-bound HIT family protein from Mycobacterium smegmatis (MSMEG5028; PDB ID: 3O0M; Z-score ... |
| 7 | 4ex5 | - | http://dx.plos.org/10.1371/journal.pone.0096198 | Structural Basis for the Site-Specific Incorporation of Lysine Derivatives into Proteins | 2014 | V Flgel, M Vrabel, S Schneider - PloS one, 2014 - dx.plos.org | ... A structure of the LysRS from Bacillus stearothermophilus (PDB code 3A74), Bulkholderia thailandensis (PDB code 4EX5 [38]) and Escherichia coli (PDB ... Atomic coordinates were submitted to the Protein Data Bank (http://www.ebi.ac.uk/pdbe/) with the PDB codes: 4CH6 ... |
| 8 | 3eg4 | - | http://dx.plos.org/10.1371/journal.pone.0031133 | Tetrahydrodipicolinate N-Succinyltransferase and Dihydrodipicolinate Synthase from Pseudomonas aeruginosa: Structure Analysis and Gene Deletion | 2012 | R Schnell, W Oehlmann, T Sandalova, Y Braun? - PloS one, 2012 - dx.plos.org | ... In addition, the coordinates for DapD from Campylobacter jejuni (2RIJ), Enterococcus feacalis (3CJ8), Brucella melitensis (3EG4), and Yersinia ... model of the trimer of the putative tetrahydropyridine-2-carboxylate N-succinyltransferase from Campylobacter jejuni (PDB code ... |
| 9 | 4ege | - | http://www.sciencedirect.com/science/article/pii/S1570963916302278 | Crystal structure and biochemical investigations reveal novel mode of substrate selectivity and illuminate substrate inhibition and allostericity in a subfamily of Xaa-Pro | 2017 | VN Are, A Kumar, S Kumar, VD Goyal, B Ghosh - et Biophysica Acta (BBA , 2017 - Elsevier | ... are lacking with literature reports of either only structural data (PDB entries; 1WN1, 1WY2, 3Q6D,2IW2, 4EGE) or only ... for this was prepared by Chainsaw [26] using the XPDxc protein sequenceand the structure of a putative XPD from Thermococcus sibiricus (PDB: 4FKC) [8 ... |
| 10 | 7jw0 | - | https://pubs.acs.org/doi/abs/10.1021/acs.jctc.1c00372 | Dynamic Profiling of Binding and Allosteric Propensities of the SARS-CoV-2 Spike Protein with Different Classes of Antibodies: Mutational and Perturbation-Based | 2021 | G Verkhivker, S Agajanian, D Oztas- Journal of Chemical, 2021 - ACS Publications | The functional adaptability and conformational plasticity of SARS-CoV- 2 spike proteins allow for the efficient modulation of complex phenotypic responses to the host receptor and antibodies. In thi... |