We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 4JQP | 2013 | 2 |
| 4WSH | 2014 | 2 |
| 7LD8 | 2021 | 2 |
| 4F83 | 2012 | 2 |
| 8DP2 | 2022 | 2 |
| 5VOG | 2017 | 2 |
| 4QKU | 2014 | 2 |
| 5UF2 | 2017 | 1 |
| 6CY1 | 2018 | 1 |
| 4PZU | 2014 | 1 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 4qhq | - | https://link.springer.com/protocol/10.1007/978-1-4939-8736-8_12 | Navigating Among Known Structures in Protein Space | 2019 | A Narunsky, N Ben-Tal, R Kolodny- Computational Methods in Protein, 2019 - Springer | evolutionary history, with sequences that diverged beyond the point where one can identify their common ancestry; for example, the SCOP fold, CATH Architecture , and ECOD As both neighbors ( pdb 4qhq and pdb 3qwl) have a bound methionine in their PDB structure (Fig |
| 2 | 4tu1 | - | http://scripts.iucr.org/cgi-bin/paper?S2053230X14017087 | Structure of Toxoplasma gondii fructose-1, 6-bisphosphate aldolase | 2014 | LE Boucher, J Bosch - Acta Crystallographica Section F: Structural …, 2014 - scripts.iucr.org | ... bound to TRAP (PDB entry 2pc4 , chain D) and TgAldolase (PDB entry 4tu1 , chains A ... highlightsthe residues important for adhesin binding in the TRAP-bound PfAldolase structure (PDB entry2pc4 ... to -helix 10 in chain A does not align with the PfAldolase structure; however, the ... |
| 3 | 3hhj | - | http://www.sciencedirect.com/science/article/pii/S0006291X12004056 | Insights into substrate recognition by the< i> Escherichia coli</i> Orf135 protein through its solution structure | 2012 | K Kawasaki, T Kanaba, M Yoneyama? - Biochemical and Biophysical Research Communications, 2012 - Elsevier | ... Finally, this study should contribute towards a further understanding of the substrate specificity of Nudix enzymes. For example, the DALI server showed the highest similarity score of 18.9 to the recently published Nudix enzyme (PDB:3hhj) [27]. ... |
| 4 | 3cxk | - | http://www.sciencedirect.com/science/article/pii/S0378111912014242 | Methionine sulfoxide reduction in ciliates: Characterization of the ready-to-use methionine sulfoxide-< i> R</i>-reductase genes in< i> Euplotes</i> | 2013 | N Dobri, EEN Oumarou, C Alimenti, C Ortenzi? - Gene, 2012 - Elsevier | ... The crystallographic structure of the Burkholderia pseudomallei MsrB (PDB ID: 3cxk) was automatically selected by the server as a template since it shows an amino acid sequence identity of 53% and 56% with the MsrB protein of E. raikovi and E. nobilii, respectively. ... |
| 5 | 4lgv | - | http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0152403 | Determinants of Cofactor Specificity for the Glucose-6-Phosphate Dehydrogenase from Escherichia coli: Simulation, Kinetics and Evolutionary Studies | 2016 | M Fuentealba, R Muoz, P Maturana, A Krapp - PloS one, 2016 - journals.plos.org | ... Four additional G6PDH sequences were included: those from Mycobacterium avium(Actinobacteria), whose structure is known (PDB ID 4LGV), from Borreliaburgdorferi (Spirochaetes),Synechocisits (Cyanobacteria) and Chlamydophila pneumoniae (Chlamydiae). ... |
| 6 | 4dz4 | - | https://www.frontiersin.org/articles/10.3389/fpls.2020.00987/full?report=reader | The neighboring subunit is engaged to stabilize the substrate in the active site of plant arginases | 2020 | B Sekula- Frontiers in plant science, 2020 - frontiersin.org | It is worth noting that the structure of agmatinase from Deinococcus radiodurans ( PDB ID: 1WOG) (Ahn et al., 2004) is ID: 3LHL), agmatinase from Thermoplasma volcanium (TvAGM, PDB ID: 3PZL), and agmatinase from Burkholderia thailandensis (BtAGM, PDB ID: 4DZ4 ) |
| 7 | 3sw5 | 3fq3 | https://link.springer.com/article/10.1134/S0006297920030086 | Effect of Structure Variations in the Inter-subunit Contact Zone on the Activity and Allosteric Regulation of Inorganic Pyrophosphatase from Mycobacterium tuberculosis | 2020 | RS Romanov, SA Kurilova, AA Baykov- Biochemistry (Moscow, 2020 - Springer | of Ec PPase [15, 16], and bound L malate was found in the crystal struc ture of PPase from Bartonella henselae ( PDB ID 3SW5 ) Furthermore, modification of the subunit contact zones does not change the oligomeric structure of Mt PPase, but makes it less compact, as shown |
| 8 | 3uam | - | https://academic.oup.com/plcell/advance-article-abstract/doi/10.1093/plcell/koab... | Effectors With Chitinase Activity (EWCAs), a family of conserved, secreted fungal chitinases that suppress chitin-triggered immunity | 2021 | J Martnez-Cruz, D Romero, J Hierrezuelo- The Plant, 2021 - academic.oup.com | Phytopathogenic fungi secrete effectors with chitinase activity to break down immunogenic chitin oligomers and suppress plant immunity. The other models are 3D models of crystallized proteins from Hypocrea jecorina (2VTC, glycoside hydrolase family 61 member), A. oryzae (4MAH, lytic poly- saccharide monooxygenase), E. faecalis (4A02, chitinase), and Burkholderia pseudomallei (3UAM, chitin-binding domain) |
| 9 | 4ijn | - | http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0184183 | Sugar analog synthesis by in vitro biocatalytic cascade: A comparison of alternative enzyme complements for dihydroxyacetone phosphate production as a | 2017 | CJ Hartley, NG French, JA Scoble, CC Williams- PloS one, 2017 - journals.plos.org | of pH 7.09.0 and between 2537C. Most of the selected enzymes had known crystal structures (those with ATP-recycling enzymes, two acetate kinases (AceK) from Mycobacterium smegmatis and Methanosarcina thermophila (AceK Ms ; WI_011727188; PDB 4IJN and AceK |
| 10 | 3uam | - | http://pubs.acs.org/doi/abs/10.1021/acs.chemrev.7b00421 | Oxygen Activation by Cu LPMOs in Recalcitrant Carbohydrate Polysaccharide Conversion to Monomer Sugars | 2017 | KK Meier, SM Jones, T Kaper, H Hansson- Chemical, 2017 - ACS Publications | Their activity and structural underpinnings provide insights into biological mechanisms of polysaccharide ... Table 4. AA10 LPMO Structures Available in the Protein Data Bank Burkholderia pseudomallei LPMO10A, BpAA10A 3UAM |