We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 8SBN | 2023 | 1 |
| 4QIC | 2015 | 1 |
| 3T1D | 2011 | 1 |
| 3SZ8 | 2011 | 1 |
| 5TGD | 2016 | 1 |
| 4QQ7 | 2014 | 1 |
| 6BS7 | 2018 | 1 |
| 5TEW | 2016 | 1 |
| 6WHP | 2020 | 1 |
| 4IZO | 2013 | 1 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 4h51 | 4w5k, 3meb | http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0158402 | Structural Insights into a Novel Class of Aspartate Aminotransferase from Corynebacterium glutamicum | 2016 | HF Son, KJ Kim - PloS one, 2016 - journals.plos.org | ... A) RMSD of reported AspAT structures were analyzed. PDB code 1SPA; Escherichia coli, 7AAT; Gallus gallus (cytosolic), 2CST; Gallus gallus (mitochondrial), 3PD6; Mus musculus, 4W5K; Trypanosoma brucei, 1AJR; Sus scrofa, 3MEB; Gaiardia lamblia, 1YAA; Saccharomyces cerevisiae, 4H51; Leishmania major, 3K7Y; Plasmodium falciparum, ... |
| 2 | 3u03 | - | https://www.sciencedirect.com/science/article/pii/S0168365917309458 | Overcoming antibiotic resistance: Is siderophore Trojan horse conjugation an answer to evolving resistance in microbial pathogens? | 2017 | K Dhusia, A Bajpai, PW Ramteke- Journal of Controlled Release, 2017 - Elsevier | Comparative study of siderophore biosynthesis pathway in pathogens provides potential targets for antibiotics and host drug delivery as a part of computationall. |
| 3 | 5k9f | - | https://www.nature.com/articles/s41419-025-08070-5 | TRIM17 promotes the progression of osteosarcoma by regulating PDK1 m6A modification-mediated AKT/mTOR pathway activation through ubiquitination of FTO | 2025 | W Liu, D Zheng, X Huang, Z Wei, Z Wei, W Guo- Cell death & disease, 2025 - nature.com | Download the three-dimensional structures of TRIM17 (ID: 6Z08) and FTO (ID: 5K9F ) from the PDB database, and remove the ligands and water molecules. The amino acid residues |
| 4 | 4k9d | - | https://pubs.rsc.org/en/content/articlehtml/2021/ra/d0ra10119b | Thermal stability and structure of glyceraldehyde-3-phosphate dehydrogenase from the coral Acropora millepora | 2021 | AM Perez, JA Wolfe, JT Schermerhorn, Y Qian- RSC Advances, 2021 - pubs.rsc.org | The PDB validation server shows this structure to be typical of structures of comparable resolution in measures of R and number of Ramachandran, sidechain and real-space R-value Z score (RSRZ) outliers ( PDB ID 6PX2) The model used for molecular replacement was 4K9D |
| 5 | 3o0h | - | http://eprints.sunway.edu.my/893/ | Sulphur (lone pair) interactions with FAD in flavoenzymes | 2018 | RFN Silva, ACS Sacco, I Caracelli- Zeitschrift fur, 2018 - eprints.sunway.edu.my | Finally, in the 22 SOX enzymes found in PDB , there were 45 monomers having FAD S(lp)(FAD) interactions in three examples of GR enzymes: (a) 1K4Q [64], (b) 3O0H [64] and with FAD via S(lp)(FAD) interactions that pro- vide stability to the secondary structure and |
| 6 | 5i0p | - | https://ecommons.cornell.edu/handle/1813/70073 | STRUCTURE AND FUNCTION OF THE PALMITOYLTRANSFERASE DHHC20 AND THE ACYL COA HYDROLASE MBLAC2 | 2019 | MIP Malgapo - 2019 - ecommons.cornell.edu | crystals ..... 43 The overall structure of hDHHC20 and zfDHHC15 is similar to what was predicted for DHHC enzymes .... 44 Two zinc ions serve a structural function in the cysteine-rich domain of DHHC20 ..... 44 |
| 7 | 3swt | - | https://www.biorxiv.org/content/10.1101/2021.01.05.425418v1.abstract | Virus-associated organosulfur metabolism in human and environmental systems | 2021 | K Kieft, AM Breister, P Huss, AM Linz, E Zanetakos- bioRxiv, 2021 - biorxiv.org | oxygen binding (eg WH and H) (Knauer 198 et al., 2012). Conserved amino acid residues that are not functional are likely preserved for 199 structural features. The retention of AMGs on viral genomes despite strong selective ... Annotations of functional amino acid residues were labeled according to the Protein Data Bank (PDB, accessed January 2019) (Berman et al., 2000) with the following identification numbers: 4BZQ and 4BZP (CysC), 2GOY (CysH), 3ZEI (CysK), 3SWT (TauD), and 1RG9 (MetK). |
| 8 | 3uam | - | http://pubs.acs.org/doi/abs/10.1021/acs.chemrev.7b00421 | Oxygen Activation by Cu LPMOs in Recalcitrant Carbohydrate Polysaccharide Conversion to Monomer Sugars | 2017 | KK Meier, SM Jones, T Kaper, H Hansson- Chemical, 2017 - ACS Publications | Their activity and structural underpinnings provide insights into biological mechanisms of polysaccharide ... Table 4. AA10 LPMO Structures Available in the Protein Data Bank Burkholderia pseudomallei LPMO10A, BpAA10A 3UAM |
| 9 | 3he2 | - | http://www.nature.com/articles/nmicrobiol20156 | THPP target assignment reveals EchA6 as an essential fatty acid shuttle in mycobacteria | 2016 | JAG Cox, KA Abrahams, C Alemparte - Nature , 2016 - nature.com | ... Using M. tuberculosis EchA6 (PDB entry 3HE2) as a search model, we determined initial phases by molecular replacement (PHASER39). The models were rebuilt and refined (COOT40, REFMAC541, PHENIX.REFINE42) using non-crystallographic symmetry ... |
| 10 | 3gvc | - | http://www.sciencedirect.com/science/article/pii/S0960852417303887 | Improved xylitol production by expressing a novel D-arabitol dehydrogenase from isolated Gluconobacter sp. JX-05 and co-biotransformation of whole cells | 2017 | X Qi, H Zhang, TA Magocha, Y An, J Yun, M Yang - Bioresource , 2017 - Elsevier | ... Phyre2 (Kelley et al., 2015) was used to predict the 3D structure of ArDH. ..Another two SDR enzymes, short-chain dehydrogenase reductase (PDB ID: 3GVC) of M. tuberculosis and galactitol dehydrogenase (PDB ID: 2WSB) of R. sphaeroides were also used in the superposition of structure modeling. ... |