We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 4XFK | 2015 | 1 |
| 3QKA | 2011 | 1 |
| 6OTU | 2019 | 1 |
| 6XDK | 2020 | 1 |
| 5DXD | 2015 | 1 |
| 6AMR | 2018 | 1 |
| 5JRY | 2016 | 1 |
| 3QLJ | 2011 | 1 |
| 3QRE | 2011 | 1 |
| 5JTK | 2016 | 1 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3k9w | - | http://www.sciencedirect.com/science/article/pii/S1570963916300607 | Transition of phosphopantetheine adenylyltransferase from catalytic to allosteric state is characterized by ternary complex formation in Pseudomonas aeruginosa | 2016 | R Chatterjee, A Mondal, A Basu, S Datta - Biochimica et Biophysica Acta ( , 2016 - Elsevier | ... 5-phosphosulfate [PDB ID: 3OTW, 3NV7] [29] and Burkholderia pseudomallei in complex withhydrolyzed dPCoA [PDB ID: 3K9W] [30]. ... was solved using PHASER [38] and by utilizing E. coliphosphopantetheine adenylyltransferase (1HIT chain A) as a starting structure. ... |
| 2 | 4f4h | 5kha | http://www.jbc.org/content/293/19/7397.short | Kinetics and structural features of dimeric glutamine-dependent bacterial NAD+ synthetases suggest evolutionary adaptation to available metabolites | 2018 | ARS Santos, ECM Gerhardt, VR Moure- Journal of Biological, 2018 - ASBMB | Given the availability of a 1.7 resolution structure of dimeric NadE2 Gln from B. thailandensis ( PDB code 4F4H ) obtained by the Burkholderia structome project (21), we used this protein to analyze the structural features of the subgroup of dimeric NadE2 Gln |
| 3 | 3v7o | - | https://books.google.com/books?hl=en&lr=&id=_E0zDwAAQBAJ&oi=fnd&pg=PR6&dq=%223V7... | Viral Shapeshifters: Strange Behaviors of HIV and Other Viruses | 2017 | GKM Goh - 2017 - books.google.com | and www.ncbi.nlm.nih.gov. Jmol and CN3D were used in this book. Sequences and structural protein databank ( PDB ) files are available at www.ncbi.nlm.nih.gov Linus Pauling discov- ered a common helical structure , the alpha helix, among pro- teins |
| 4 | 3py6 | - | http://link.springer.com/article/10.1007/s10867-013-9324-x | Influence of CH... O interactions on the structural stability of beta-lactamases | 2013 | P Lavanya, S Ramaiah, A Anbarasu - Journal of Biological Physics, 2013 - Springer | ... We selected a non-redundant data set of 95 ?-lactamases from the Protein Data Bank (PDB) [23] for our ... Table 2 CHEEEO interacting residues in the active site of ?-lactamases PDB ID Active site residues ... 130 Ser 70 Ser 235 Arg 244 Met 69 Tyr 105 Val 216 Gly 236 3PY6-A Arg ... |
| 5 | 5i7w | - | https://www.rug.nl/research/portal/files/79350072/Chapter_1.pdf | Omega transaminases: discovery, characterization and engineering | 2019 | CM Palacio - 2019 - rug.nl | (7), who grouped the enzymes in superfamilies by structural similarities and named the superfamilies after the PLP enzyme of which the crystal structure was determined first. The PLP fold-type classification system of Grishin et al Brucella suis, pdb 5I7W ) |
| 6 | 3v2i | - | http://www.sciencedirect.com/science/article/pii/S2211546314000990 | Crystal structure of peptidyl-tRNA hydrolase from a Gram-positive bacterium, Streptococcus pyogenes at 2.19 Å resolution shows the closed structure of the substrate-binding cleft | 2014 | A Singh, L Gautam, M Sinha, A Bhushan, P Kaur… - FEBS open bio, 2014 - Elsevier | ... 27], Francisella tularensis (FtPth) (PDB: 3NEA) [28] and Burkholderia thailandensis (BtPth) (PDB:3V2I) [29]. ... tripeptide (grey) from the neighbouring molecule from the structure of EcPth (PDB ID:2PTH ... with the stereochemistry of the substrate binding cleft in the structure of SpPth ... |
| 7 | 4yl5 | - | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7093009/ | Essential Metabolic Routes as a Way to ESKAPE from Antibiotic Resistance | 2020 | ALC Barra, CD Lvia de Oliveira, LG Moro- Frontiers in Public, 2020 - ncbi.nlm.nih.gov | ID 2I5B (23)], Thermus thermophilus ( PDB ID 1UB0), A. baumannii ( PDB ID 4YL5 ), Bacteroides thetaiotaomicron tuberculosis (3O63), and for the bifunctional enzyme from Candida glabrata [ PDB IDs 3NL2 No crystal structure of an ESKAPE pathogen, ThiE, is available to date |
| 8 | 3nf4 | - | http://pubs.acs.org/doi/full/10.1021/bi4002979 | Mycobacterium tuberculosis Utilizes a Unique Heterotetrameric Structure for Dehydrogenation of the Cholesterol Side Chain | 2013 | ST Thomas, NS Sampson - Biochemistry, 2013 - ACS Publications | ... 16) FAD binding and CoA binding in published ACAD Protein Data Bank (PPDB) structures ... between FAD and several ACADs in reported crystal structures (PDB entry in ... 2WBI) and bacterial ACADS from Megsphaera elsdenii (1BUC) and Mycobacterium thermoresistibile (3NF4 ... |
| 9 | 2kn9 | - | http://journal.iisc.ernet.in/index.php/iisc/article/view/4461 | Redox Proteins of Mycobacterium tuberculosis | 2014 | S Phulera, M Akif, AA Sardesai? - Journal of the Indian Institute of Science, 2014 - journal.iisc.ernet.in | ... The individual structures shown are (A) NrdH, pdb id: 4HS1, (B) FurB, pdb id: 2O03, (C) DipZ,pdb id: 2HYX, (D) FcoT, pdb id: 2PFC, (E) AhpD, pdb id: 1KNC, (F) Mycoredoxin, pdb id: 2LQQ, (G) Rubedoxin C with Zinc atom shown as sphere, pdb id: 2KN9, (H) TrxC, pdb id: 1LU4 ... |
| 10 | 2lbb | - | http://www.sciencedirect.com/science/article/pii/S0141813017301216 | Lipid membranes and acyl-CoA esters promote opposing effects on acyl-CoA binding protein structure and stability | 2017 | MC Micheletto, LFS Mendes, LGM Basso - International Journal of , 2017 - Elsevier | ... Other secondary structures such as loops and disordered conformations contribute to the remaining 37%, whose values are consistent with the available structures of ACBP homologues in the protein data bank (PDB ID 2ABD, 3FP5 and 2LBB). Incubation with OCoA does not change the CD spectrum of CnACBP... |