We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 4XFK | 2015 | 1 |
| 3QKA | 2011 | 1 |
| 6OTU | 2019 | 1 |
| 6XDK | 2020 | 1 |
| 5DXD | 2015 | 1 |
| 6AMR | 2018 | 1 |
| 5JRY | 2016 | 1 |
| 3QLJ | 2011 | 1 |
| 3QRE | 2011 | 1 |
| 5JTK | 2016 | 1 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 4yl5 | - | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7093009/ | Essential Metabolic Routes as a Way to ESKAPE from Antibiotic Resistance | 2020 | ALC Barra, CD Lvia de Oliveira, LG Moro- Frontiers in Public, 2020 - ncbi.nlm.nih.gov | ID 2I5B (23)], Thermus thermophilus ( PDB ID 1UB0), A. baumannii ( PDB ID 4YL5 ), Bacteroides thetaiotaomicron tuberculosis (3O63), and for the bifunctional enzyme from Candida glabrata [ PDB IDs 3NL2 No crystal structure of an ESKAPE pathogen, ThiE, is available to date |
| 2 | 4yk1 | 4yk2, 4yk3 | https://www.frontiersin.org/articles/10.3389/fmicb.2019.00921/abstract | Versatility of the BID domain: Conserved function as type-IV-secretion-signal and secondarily evolved effector functions within Bartonella-infected host cells | 2019 | A Wagner, C Tittes, C Dehio- Frontiers in microbiology, 2019 - frontiersin.org | BID fold is highlighted through superposition of the three solved BID domains: BroBep6_tBID1 (green; PDB : 4YK1 ), BclBep9_tBID1 (cyan; PDB : 4YK2), and BheBepE_BID1 (purple; PDB : 4YK3 into ancestral tBIDs found in the canonical FIC-OB-BID architecture and derived |
| 3 | 4h3e | - | http://www.publish.csiro.au/ch/ch19346 | The Crystal Structure of the Manganese Superoxide Dismutase from Geobacillus stearothermophilus: Parker and Blake (1988) Revisited | 2020 | JJ Adams, CJ Morton, MW Parker- Australian Journal of Chemistry, 2020 - CSIRO | determined primarily by X-ray crystallography, although one SOD structure has been SODs have also been determined from Pseudomonas putida (ovalis) ( PDB ID: 1dto acidocaldarius (1b06), [ 27 ] Acanthamoeba castellanii (6j55), [ 28 ] Trypanosoma cruzi ( 4h3e ), [ 29 ] Vigna |
| 4 | 3lgj | 3pgz | https://patents.google.com/patent/US20180179500A1/en | Modified enzymes | 2018 | AJ Heron, RV Bowen, M Bruce- US Patent App. 15, 2018 - Google Patents | In order to assess whether a suitable protein structure exists to use as a template to build a protein model, a search is performed on the protein data bank ( PDB ) database The sequence alignment and template structure are then used to produce a structural model of the The polynucleotide binding motif may be selected from any of those shown in Table 5 below. Bartonella 3LGJ, Q6G302 homo-tetramer |
| 5 | 3u03 | - | https://www.sciencedirect.com/science/article/pii/S0168365917309458 | Overcoming antibiotic resistance: Is siderophore Trojan horse conjugation an answer to evolving resistance in microbial pathogens? | 2017 | K Dhusia, A Bajpai, PW Ramteke- Journal of Controlled Release, 2017 - Elsevier | Comparative study of siderophore biosynthesis pathway in pathogens provides potential targets for antibiotics and host drug delivery as a part of computationall. |
| 6 | 5vcu | - | http://www.japsonline.com/admin/php/uploads/2894_pdf.pdf | In-silico study of flavonoids from Cassia tora as potential anti-psoriatic agent | 2019 | I Akachukwu, EE Amara- Journal of Applied Pharmaceutical, 2019 - japsonline.com | 4; CCS ( PDB 5QC5) cathepsin S; JAK-3 ( PDB 5TTS) Janus kinase; RAC-1 ( PDB 5VCU ) Ras-related a vital structural requirement for strong binding with the target proteins The validity of the suggested structure - activity relationship is predicated on the observed reduction of |
| 7 | 4hvt | - | https://chemrxiv.org/ndownloader/articles/7053812/versions/1/export_pdf | Pyrococcus furiosus Prolyl Oligopeptidase: A Dynamic Supramolecular Host for Peptidase and Dirhodium Catalysis | 2018 | K Ellis-Guardiola, H Rui, R Beckner, P Srivastava - 2018 - chemrxiv.org | both Pfu POP and the S447C mutant possess a two-domain architecture involving a peptidase domain reported homology model; M. xanthus chain A from 2BKL; R. typhi from 4HVT ; S. Scrofa from 1QFS; H. Page 17 S1). The structure of |
| 8 | 3rd5 | - | https://www.mdpi.com/2073-4352/9/10/533 | Trial Direct Phasing Calculation of A Thyroid Hormone Receptor Alpha Structure (4LNW) | 2019 | M Jiang, H He, WP Su- Crystals, 2019 - mdpi.com | It is worth mentioning that 3RD5 is a test structure with the lowest solvent content that we have successfully applied the direct method to. 4. Methodology After locating the two ligands, MJ and HH were informed that the test structure has the PDB code 4LNW |
| 9 | 3o0m | - | http://jb.asm.org/content/early/2017/06/14/JB.00304-17.abstract | The DNA repair repertoire of Mycobacterium smegmatis FenA includes the incision of DNA 5'flaps and the removal of 5'adenylylated products of aborted nick ligation | 2017 | ML Uson, S Ghosh, S Shuman- Journal of bacteriology, 2017 - Am Soc Microbiol | MSMEG_5871 (Rv0759c) has not been characterized. MSMEG_5028 (Rv1262c) has been characterized structurally (PDB entry 3O0M), but its biochemical activity is uncharted. |
| 10 | 4f4h | 5kha | http://www.jbc.org/content/293/19/7397.short | Kinetics and structural features of dimeric glutamine-dependent bacterial NAD+ synthetases suggest evolutionary adaptation to available metabolites | 2018 | ARS Santos, ECM Gerhardt, VR Moure- Journal of Biological, 2018 - ASBMB | Given the availability of a 1.7 resolution structure of dimeric NadE2 Gln from B. thailandensis ( PDB code 4F4H ) obtained by the Burkholderia structome project (21), we used this protein to analyze the structural features of the subgroup of dimeric NadE2 Gln |