We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 6U3L | 2020 | 1 |
| 7KLI | 2020 | 1 |
| 8G0T | 2023 | 1 |
| 5VJY | 2017 | 1 |
| 8SC0 | 2023 | 1 |
| 4HR3 | 2012 | 1 |
| 5VL1 | 2017 | 1 |
| 6UJ5 | 2020 | 1 |
| 2M0N | 2012 | 1 |
| 4IZ9 | 2013 | 1 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3e7d | 3uk1 | http://link.springer.com/article/10.1007/s00894-014-2136-5 | CH pi interactions in proteins: prevalence, pattern of occurrence, residue propensities, location, and contribution to protein stability | 2014 | M Kumar, PV Balaji - Journal of molecular modeling, 2014 - Springer | ... The coordinates of proteins included in the dataset were downloaded from the protein databank [33]. ... discoideum non-muscle type myosin-2 heavy chain (PDB id 3BZ9). ... Brucella abortus CobH, precorrin-8X methylmutase 3E7D D Phe16:CE1 Tyr12 2.83 1.84 172 66 ... |
| 2 | 3ke1 | - | http://pubs.acs.org/doi/full/10.1021/jm3016816 | Torsion Angle Preferences in Druglike Chemical Space: A Comprehensive Guide | 2013 | C Sch?rfer, T Schulz-Gasch, HC Ehrlich? - Journal of medicinal ?, 2013 - ACS Publications | ... The growing number of entries in the Cambridge Structural Database (CSD)(19) and the ProteinData Bank (PDB)(20) allow derivation of more and more reliable and specific rules, and efficient tools exist to do this.(21, 22) Here we present ... PDB entry 3ke1(39) exemplifies ... |
| 3 | 3e5y | - | http://link.springer.com/article/10.1007/s12038-015-9554-0 | Analysis of coreperiphery organization in protein contact networks reveals groups of structurally and functionally critical residues | 2015 | AE Isaac, S Sinha - Journal of biosciences, 2015 - Springer | ... residues are in the innermost cores, suggesting that the network core is critically important in maintaining the structural stability of ... 2.1 Protein structure analysis. ... set of 66 non-redundant protein structures obtained from the Protein Data Bank ( http://www.rcsb.org/pdb ) that include ... For the exceptions, viz., proteins with PDB ids 1a30, 1aac, 1auw, 1cbr, 1vl4, 3e5y and 3js3, we verified that those proteins among this group ( |
| 4 | 3gvi | - | http://www.wjpps.com/admin/assets/article_issue/1382162610.pdf | Rhizobitoxine enhances nodulation by inhibiting ethylene synthesis of bradyrhizobium elkanii from lespedeza species: validation by homology modelling and | 2013 | R Vijayan, P Palaniappan, SA Tongmin - World J of pharm and , 2013 - wjpps.com | ... docking studies with the known inhibitor rhizobitoxine. The crystal structure of protein was taken from the Protein Data Bank (entry PDB code: 3GVI). So, we considered the active site residues predicted from the LIGSITE and CASTp has been used for binding with ... |
| 5 | 3md7 | 3urr, 3uw3, 3swo, 3mqd | http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4257144/ | The electrostatic profile of consecutive Cβ atoms applied to protein structure quality assessment | 2013 | S Chakraborty, R Venkatramani, BJ Rao… - …, 2013 - ncbi.nlm.nih.gov | ... PDB, NRes, NStructures, Specificity. ... based on the 'sequence to structure to function' paradigmis contingent upon the availability of its 3D-structure. The rapidly developing field of nextgeneration sequencing has exacerbated the bottleneck of obtaining structural data using ... |
| 6 | 4qhq | - | https://scripts.iucr.org/cgi-bin/paper?tb5146 | Structural insights into the substrate specificity of SP_0149, the substrate-binding protein of a methionine ABC transporter from Streptococcus pneumoniae | 2019 | B Jha, R Vyas, J Bhushan, D Sehgal- Section F: Structural, 2019 - scripts.iucr.org | Z-score Rmsd (A ) Nalign %seq} Bound substrate PDB code Protein name and description 15.2 1.36 223 41 Met 4qhq A nutrient-binding protein (bound to methionine in the Sequence identity in SSM is calculated from structure (three-dimensional), rather than sequence |
| 7 | 3uam | - | http://pubs.acs.org/doi/abs/10.1021/acs.chemrev.7b00421 | Oxygen Activation by Cu LPMOs in Recalcitrant Carbohydrate Polysaccharide Conversion to Monomer Sugars | 2017 | KK Meier, SM Jones, T Kaper, H Hansson- Chemical, 2017 - ACS Publications | Their activity and structural underpinnings provide insights into biological mechanisms of polysaccharide ... Table 4. AA10 LPMO Structures Available in the Protein Data Bank Burkholderia pseudomallei LPMO10A, BpAA10A 3UAM |
| 8 | 4fi5 | - | http://onlinelibrary.wiley.com/doi/10.1002/jcb.25765/full | Prediction of B Cell Epitopes Among Hantavirus Strains Causing Hemorragic Fever With Renal Syndrome | 2016 | S Kalaiselvan, S Sankar, M Ramamurthy - Journal of Cellular , 2016 - Wiley Online Library | ... The 3-D predicted tertiary structure of protein for the Hantaan genotype. ... Our consensus Hantaanvirus nucleoprotein-coding aa submission had 93% (Z-score: 2.19) sequence identity withN-terminal domain of Hantaan virus strain 76118 nucleoprotein (PDB ID: 4FI5) and 79 ... |
| 9 | 4g6z | 4gri | http://scripts.iucr.org/cgi-bin/paper?S2053230X14010723 | Preliminary X-ray crystallographic analysis of an engineered glutamyl-tRNA synthetase from Escherichia coli | 2014 | N Chongdar, S Dasgupta, AB Datta - Section F: Structural , 2014 - scripts.iucr.org | ... S. & Yokoyama, S. (2010). Acta Cryst. D66, 813-820.] ). In addition, crystal structures of GluRS from Burkholderia thailandensis (PDB entry 4g6z ; Baugh et al., 2013 [Baugh, L. et al. (2013). PLoS One, 8, e53851.] ) and Borrelia ... |
| 10 | 4ijn | - | http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0184183 | Sugar analog synthesis by in vitro biocatalytic cascade: A comparison of alternative enzyme complements for dihydroxyacetone phosphate production as a | 2017 | CJ Hartley, NG French, JA Scoble, CC Williams- PloS one, 2017 - journals.plos.org | of pH 7.09.0 and between 2537C. Most of the selected enzymes had known crystal structures (those with ATP-recycling enzymes, two acetate kinases (AceK) from Mycobacterium smegmatis and Methanosarcina thermophila (AceK Ms ; WI_011727188; PDB 4IJN and AceK |