We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 3UW2 | 2012 | 1 |
| 6MU0 | 2018 | 1 |
| 3OI9 | 2010 | 1 |
| 3R1J | 2011 | 1 |
| 6XRS | 2020 | 1 |
| 7L3O | 2020 | 1 |
| 7JP4 | 2021 | 1 |
| 6WCI | 2020 | 1 |
| 4XDQ | 2015 | 1 |
| 3R7K | 2011 | 1 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3enk | - | http://journals.cambridge.org/abstract_S003118201400136X | UDP-galactose 4′-epimerase from the liver fluke, Fasciola hepatica: biochemical characterization of the enzyme and identification of inhibitors | 2014 | VL ZINSSER, S LINDERT, S BANFORD… - …, 2014 - Cambridge Univ Press | ... These results demonstrate that, despite the structural and biochemical similarities of FhGALEand HsGALE, it is possible to discover compounds which preferentially inhibit ... pymol.org) to thesubunits of Burkholderia pseudo- mallei GALE structure (PDB ID: 3ENK) and NAD+ ... |
| 2 | 3qxz | 3oc7, 4qtp, 3swx, 3qk8, 3qre | https://www.sciencedirect.com/science/article/pii/S1476927117300105 | Similarity/dissimilarity analysis of protein structures based on Markov random fields | 2018 | J Wu, T Zhou, J Tao, Y Hai, F Ye, X Liu, Q Dai- Computational biology and, 2018 - Elsevier | Recently, the growth of the Protein Data Bank ( PDB ) (Berman et al., 2000) has been accelerated by a large scale As a result, fast and efficient algorithms for protein structure comparison have become more important to take advantage of the huge amount of structural data |
| 3 | 3md7 | 3urr, 3uw3, 3swo, 3mqd | http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4257144/ | The electrostatic profile of consecutive Cβ atoms applied to protein structure quality assessment | 2013 | S Chakraborty, R Venkatramani, BJ Rao… - …, 2013 - ncbi.nlm.nih.gov | ... PDB, NRes, NStructures, Specificity. ... based on the 'sequence to structure to function' paradigmis contingent upon the availability of its 3D-structure. The rapidly developing field of nextgeneration sequencing has exacerbated the bottleneck of obtaining structural data using ... |
| 4 | 4k6f | - | http://search.ebscohost.com/login.aspx?direct=true&profile=ehost&scope=site&auth... | Cloning, expression and molecular modeling of the anthocyanidin reductase (FaANR) gene during strawberry fruit development. | 2017 | PC Mandave, AA Kuvalekar, NL Mantri, MA Islam- Fruits, 2017 - search.ebscohost.com | respectively. Molecular docking study was performed on 3D structure of ANR obtained from homology modeling technique to check binding interaction of template molecule ( PDB ID: 4K6F ) with bound ligand (NADP). Ligand |
| 5 | 3tzs | - | https://patents.google.com/patent/US20160282341A1/en | Plasmonic biosensors with built-in artificial antibodies | 2016 | S Singamaneni, L Tian, KK Liu, A Abbas- US Patent App. 15, 2016 - Google Patents | organic silane monomers are functionalized prior to polymerizing the functional monomers onto the template molecule-nanostructure core structure 6.8, MW=64.5 kDa) or 0.5 mg/mL recombinant human neutrophil gelatinase-associated lipocalin (NGAL; pdb ID: 3TZS , Ip=8.9 |
| 6 | 4iz9 | - | http://www.sciencedirect.com/science/article/pii/S1570963913002288 | Mechanistic features of< i> Salmonella typhimurium</i> propionate kinase (TdcD): Insights from kinetic and crystallographic studies | 2013 | S Chittori, DK Simanshu, S Banerjee? - Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics, 2013 - Elsevier | ... The recently deposited structure of Mycobacterium avium acetate kinase (PDB ID: 4IZ9; unpublished results) determined in complex with succinic acid–APC (a nucleotide analog) conjugate also shows a bound EDO at the proposed SCFA-II site ( Supplementary Fig. S1) consistent with the conserved nature of ligand binding mechanism in acetokinase family of enzymes ... |
| 7 | 7l6c | - | https://www.nature.com/articles/s41598-025-97513-2 | Identification of novel inhibitors targeting Mycobacterium abscessus InhA through virtual screening, docking, and molecular dynamic simulations | 2025 | M Abbas, AR Alanzi, KI Sahibzada, M Nawaz- Scientific Reports, 2025 - nature.com | Enoyl-ACP reductase InhA ( PDB : 7L6 C) crystal structures were carefully chosen after an The possible binding modes of the top six hit compounds in the 7L6c binding pocket. Hit |
| 8 | 5i7w | - | https://www.rug.nl/research/portal/files/79350072/Chapter_1.pdf | Omega transaminases: discovery, characterization and engineering | 2019 | CM Palacio - 2019 - rug.nl | (7), who grouped the enzymes in superfamilies by structural similarities and named the superfamilies after the PLP enzyme of which the crystal structure was determined first. The PLP fold-type classification system of Grishin et al Brucella suis, pdb 5I7W ) |
| 9 | 3qdf | - | http://scripts.iucr.org/cgi-bin/paper?hc5132 | Expression, purification, crystallization and preliminary crystallographic analysis of Cg1458: a novel oxaloacetate decarboxylase from Corynebacterium glutamicum | 2011 | T Ran, Y Wang, D Xu, W Wang - Acta Crystallographica Section F Structural Biology and Crystallization Communications, 2011 - scripts.iucr.org | ... was collected at 1.9 ? resolution using synchrotron radiation on beamline BL17U of SSRF, Shanghai, China. Structure-solution attempts by molecular replacement were successful with PDB entries 3qdf or 2dfu as the template. ... |
| 10 | 3nrr | - | http://www.tandfonline.com/doi/abs/10.1080/07391102.2016.1186560 | Human Dihydrofolate Reductase and Thymidylate Synthase form a complex in vitro and co-localize in normal and cancer cells | 2016 | A Antosiewicz, A Jarmua, D Przybylska - Structure and , 2016 - Taylor & Francis | ... (Konagurthu, Whissto Stuckey, & Lesk, 2006). The AB dimer of the human TS structure 1HVY(Phan et al., 2001) and monomer A of the DHFR structure 1KMS (Klon et al., 2002) ... PDB ID: 3NRR)(Begley et al., 2011), Cryptosporidium hominis (Ch; PDB ID: 1QZF) ... |