We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 6WE5 | 2020 | 1 |
| 3L3B | 2010 | 1 |
| 6WGY | 2020 | 1 |
| 4IV6 | 2013 | 1 |
| 5VPV | 2017 | 1 |
| 5VRB | 2017 | 1 |
| 3T1D | 2011 | 1 |
| 6WSB | 2020 | 1 |
| 5VT6 | 2017 | 1 |
| 4ZDQ | 2015 | 1 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 4npc | - | https://www.sciencedirect.com/science/article/pii/S135951132100088X | Characterization of xylitol 4-dehydrogenase from Erwinia aphidicola and its co-expression with NADH oxidase in Bacillus subtilis | 2021 | M Li, W Zhu, Q Meng, M Miao, T Zhang- Process Biochemistry, 2021 - Elsevier | XDH, EC 1.1.1.B19) catalyzes the interconversion of xylitol and l-xylulose [11], and its primary structure is highly Computer simulation and analysis facilitated the extraction of potential structural information, which may help us further investigate the catalytic mechanism of XDH ... and the crystal structure of sorbitol dehydrogenase from Brucella suis as a template (PDB ID: 4NPC). The quality of the model was evaluated using the SAVES server. Molecular docking was conducted using Autodock |
| 2 | 3quv | - | http://www.sciencedirect.com/science/article/pii/S1047847716300016 | Crystal structure of Rv2258c from Mycobacterium tuberculosis H37Rv, an S-adenosyl-l-methionine-dependent methyltransferase | 2016 | HN Im, HS Kim, DR An, JY Jang, J Kim, HJ Yoon - Journal of Structural , 2016 - Elsevier | ... (ii) nucleic acid MTases [Rv2118c (PDB: 1I9G; Gupta et al., 2001), Rv2372c (PDB: 4L69; Kumar et al., 2014), Rv2966c (PDB: 3P9N; Sharma et al., 2015), and MAB_3226c (PDB: 3QUV)] ... |
| 3 | 5bq2 | - | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5512856/ | Structural insight into the binding of C60-derivatives with enoyl-pyruvate transferase from Helicobacter pylori | 2017 | M Teimouri, M Junaid, A Khan, H Zhang - Bioinformation, 2017 - ncbi.nlm.nih.gov | ... BLAST, UDP-Nacetyl- glucosamine 1-carboxy-vinyl-transferase of Pseudomonas aeruginosa(PDB ID 5BQ2 ... The alignment of 5BQ2 and H. pylori Enoyl pyruvate transferase is given in Figure ...The modeled structure was superimposed on to the template, giving root mean square ... |
| 4 | 4lgv | - | http://onlinelibrary.wiley.com/doi/10.1002/1873-3468.12276/full | The structure of a Trypanosoma cruzi glucose6phosphate dehydrogenase reveals differences from the mammalian enzyme | 2016 | GF Mercaldi, A Dawson, WN Hunter - FEBS letters, 2016 - Wiley Online Library | ... In M. avium and L. mesenteroides G6PDHs (PDB codes 4LGV and 1DPG respectively), thiscysteine is replaced by a valine and an alanine ... The cavity in the T. cruzi enzyme offersopportunities for a structure-based approach to develop novel G6PDH inhibitors. ... |
| 5 | 6cum | - | https://onlinelibrary.wiley.com/doi/abs/10.1107/S2059798321004368 | Introduction to molecular replacement: a time perspective | 2021 | E Dodson- Acta Crystallographica Section D: Structural, 2021 - Wiley Online Library | the phase error between the correct value and the phases generated from the best solution; Dphi_DM, the phase error after density modification, which was performed with Parrot, except for PDB entry 6cum , which used Rebuilt?, Yes if the test structure could be rebuilt |
| 6 | 4jpd | - | https://ri.conicet.gov.ar/handle/11336/83435 | Dinmica molecular y consolidacin estructural de la frataxina humana | 2016 | SE Faraj - 2016 - ri.conicet.gov.ar | The Alteration of the C-terminal Region of Human Frataxin Distorts its Structural Dynamics and Function Abajo: estructura de las protenas NB7804A de Bacillus halodurans ( PDB ID: 2KL4, amarillo); CyaY de Burkholderia cenocepacia ( PDB ID: 4JPD , gris), CyaY de |
| 7 | 4j07 | - | https://kuscholarworks.ku.edu/handle/1808/27856 | Strategies to improve the immunogenicity of subunit vaccine candidates | 2018 | Y Wei - 2018 - kuscholarworks.ku.edu | Oligomeric state of lumazine synthase Quaternary structure Organism PDB ID Pentamer 1DI0 2F59 ; 2I0F 2OBX 2O6H 2JFB 1C41 2VI5; 2C9B; 2C92; 2C94; 2C97; 2C9D; 1W19; 1W29 4J07 1EJB 1KYV; 1KYX; 1KYY Decamer Brucella spp |
| 8 | 4pq9 | - | http://www.jbc.org/content/early/2019/09/09/jbc.RA119.010619.short | A subfamily roadmap for functional glycogenomics of the evolutionarily diverse Glycoside Hydrolase Family 16 (GH16) | 2019 | AH Viborg, N Terrapon, V Lombard, G Michel- Journal of Biological, 2019 - ASBMB | by the presence of numerous helical elements on the core -jelly-roll fold, two in the N-terminal region and four in the C- terminal region, most of which are located on the opposite side of the structure from the active A tryptophan (W154 in PDB ID 4PQ9 (unpublished)) present |
| 9 | 3qat | - | http://dx.plos.org/10.1371/journal.pone.0076021.g006 | A Hybrid NRPS-PKS Gene Cluster Related to the Bleomycin Family of Antitumor Antibiotics in Alteromonas macleodii Strains | 2013 | CM Mizuno, NE Kimes, M L?pez-P?rez, E Aus?? - PloS one, 2013 - dx.plos.org | ... All-vs-all comparisons of the cluster sequences were performed using BLAST. Structural alignment of known protein structures of 1MLA, 3QAT, 2JFD and bleomycin family acyltransferase domains was performed using the PROMALS3D web server [32]. Phylogenetic analysis. ... |
| 10 | 5dvw | - | https://www.intechopen.com/online-first/docking-based-screening-of-cell-penetrat... | Docking-Based Screening of Cell-Penetrating Peptides with Antiviral Features and Ebola Virus Proteins as a Drug Discovery Approach to Develop a | 2021 | E Raoufi, B Bahramimeimandi- Viral, 2021 - intechopen.com | The potential reservoirs of EBOV RNA are three species of African fruit bats [3]. The genome of this virus contains a negative-strand RNA that encodes six structural and one non- structural proteins, which can be employed as potential drug targets, including transmembrane ... The structures of GP (PDBID: 5JQB), VP35 (PDBID: 3FKE), VP24 (PDBID: 4M0Q), VP30 (PDBID: 5DVW), VP40 (PDBID: 4LDB) and NP (PDBID: 4Z9P) proteins of EBOV were collected from Protein Data Bank |