We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 5VT6 | 2017 | 1 |
| 6WHP | 2020 | 1 |
| 3TZE | 2011 | 1 |
| 4O6V | 2014 | 1 |
| 6BZC | 2018 | 1 |
| 6NS0 | 2019 | 1 |
| 7KM7 | 2021 | 1 |
| 7K46 | 2020 | 1 |
| 3TXY | 2011 | 1 |
| 8FI6 | 2022 | 1 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3rd5 | - | http://www.sciencedirect.com/science/article/pii/S1011134416302433 | Multiple active site residues are important for photochemical efficiency in the light-activated enzyme protochlorophyllide oxidoreductase (POR) | 2016 | BRK Menon, SJO Hardman, NS Scrutton - of Photochemistry and , 2016 - Elsevier | ... A putative uncharacterized SDR protein (PDB id: 3RD5) that has the highest sequence identitywith POR was used as the reference structure and the sieving procedure removed 68% of the3RD5 residues at 1.8 sieving level using Mustang-MR sieving server. ... |
| 2 | 3gvi | - | http://www.wjpps.com/admin/assets/article_issue/1382162610.pdf | Rhizobitoxine enhances nodulation by inhibiting ethylene synthesis of bradyrhizobium elkanii from lespedeza species: validation by homology modelling and | 2013 | R Vijayan, P Palaniappan, SA Tongmin - World J of pharm and , 2013 - wjpps.com | ... docking studies with the known inhibitor rhizobitoxine. The crystal structure of protein was taken from the Protein Data Bank (entry PDB code: 3GVI). So, we considered the active site residues predicted from the LIGSITE and CASTp has been used for binding with ... |
| 3 | 3sdo | - | http://onlinelibrary.wiley.com/doi/10.1002/prot.25267/full | Crystal structure of dibenzothiophene sulfone monooxygenase BdsA from Bacillus subtilis WUS2B | 2017 | M Okai, WC Lee, LJ Guan, T Ohshiro - Proteins: Structure, , 2017 - Wiley Online Library | ... Overall structure. ... BdsA also shows structural similarities with the following proteins: putativemonooxygenase Ytnj (PDB ID: 1TVL; Q-score 0.60, not published), nitrilotriacetatemonooxygenase NmoA (PDB ID: 3SDO; Q-score 0.57, not published), EDTA monooxygenase ... |
| 4 | 3khp | - | http://scripts.iucr.org/cgi-bin/paper?rl5046 | Cloning, overexpression, purification, crystallization and preliminary X-ray diffraction analysis of Rv0241c (HtdX) from Mycobacterium tuberculosis H37Rv | 2013 | R Biswas, D Dutta, AK Das - Acta Crystallographica Section F: Structural Biology and Crystallization Communications, 2013 - scripts.iucr.org | ... PDB entry, Identity (%), Query cover (%), Reference. 1pn2, 47, 10, Koski et al. (2004 [Koski, MK, Haapalainen, AM, Hiltunen, JK & Glumoff, T. (2004). ... F66, 272-274.] ). 3khp, 36, 19, Seattle Structural Genomics Center for Infectious Disease (unpublished work). 3oml, 33, 37, Haataja ... |
| 5 | 4ex5 | - | http://pubs.acs.org/doi/abs/10.1021/jp511585w | Dynamics of the Active Sites of Dimeric Seryl t RNA Synthetase from Methanopyrus kandleri | 2015 | S Dutta, N Nandi - The Journal of Physical Chemistry B, 2015 - ACS Publications | ... (j) Class II AsnRS (11AS.pdb) from Escherichia coli. (k) Class II LysRS (4EX5.pdb) of speciesBurkholderia thailandesis. ... The dimeric structure of SerRS from methanogenic Methanopyruskandleri ( mk SerRS) is interesting for the following reasons. ... |
| 6 | 3cxk | - | https://www.sciencedirect.com/science/article/pii/S1570963920302223 | Functional characterization of methionine sulfoxide reductases from Leptospira interrogans | 2020 | N Sasoni, MD Hartman, SA Guerrero- et Biophysica Acta (BBA, 2020 - Elsevier | The Met oxidation could change the structure and function of many proteins, not only of those redox-related but also of others involved in different metabolic pathways. Until now, there is no information about the presence or function of Msrs enzymes in Leptospira interrogans |
| 7 | 3u03 | - | https://www.sciencedirect.com/science/article/pii/S0168365917309458 | Overcoming antibiotic resistance: Is siderophore Trojan horse conjugation an answer to evolving resistance in microbial pathogens? | 2017 | K Dhusia, A Bajpai, PW Ramteke- Journal of Controlled Release, 2017 - Elsevier | Comparative study of siderophore biosynthesis pathway in pathogens provides potential targets for antibiotics and host drug delivery as a part of computationall. |
| 8 | 4n5f | - | http://www.jbc.org/content/293/5/1702.short | Structural basis for substrate specificity of methylsuccinyl-CoA dehydrogenase, an unusual member of the acyl-CoA dehydrogenase family | 2018 | T Schwander, R McLean, J Zarzycki, TJ Erb- Journal of Biological, 2018 - ASBMB | The structure was solved using molecular replacement using the Phaser-MR and AutoBuild programs of the Phenix software package (31). The structure of a putative acyl-CoA dehydrogenase (PDB code 4N5F; 26.5% sequence identity) served as a search model for the molecular replacement. |
| 9 | 4o3v | 4lso, 4mei, 4jf8, 4kz1, 4nhf | http://www.nature.com/srep/2015/150603/srep10912/full/srep10912.html | Molecular and structural analysis of Legionella DotI gives insights into an inner membrane complex essential for type IV secretion | 2015 | T Kuroda, T Kubori, XT Bui, A Hyakutake, Y Uchida… - Scientific reports, 2015 - nature.com | ... (PDB ids 4JF8, 4KZ1, 4LSO, 4MEI, and 4NHF) and Richettsia typhi (4O3V) were published in PDB database. The arrangement of the VirB8 secondary structure isessentially the same as that of DotI C except for α3 and α5 (Fig. ... |
| 10 | 3he2 | - | http://www.nature.com/articles/nmicrobiol20156 | THPP target assignment reveals EchA6 as an essential fatty acid shuttle in mycobacteria | 2016 | JAG Cox, KA Abrahams, C Alemparte - Nature , 2016 - nature.com | ... Using M. tuberculosis EchA6 (PDB entry 3HE2) as a search model, we determined initial phases by molecular replacement (PHASER39). The models were rebuilt and refined (COOT40, REFMAC541, PHENIX.REFINE42) using non-crystallographic symmetry ... |