We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 7L9U | 2021 | 1 |
| 7L6S | 2021 | 1 |
| 6MAO | 2018 | 1 |
| 4ZBG | 2015 | 1 |
| 6XK2 | 2020 | 1 |
| 7JFN | 2020 | 1 |
| 3P5M | 2010 | 1 |
| 7K47 | 2020 | 1 |
| 3P85 | 2010 | 1 |
| 7K46 | 2020 | 1 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 6c9e | - | https://www.biorxiv.org/content/10.1101/2020.05.24.113720v1.abstract | Discovery and characterization of a novel family of prokaryotic nanocompartments involved in sulfur metabolism | 2020 | RJ Nichols, B LaFrance, NR Phillips, LM Oltrogge- bioRxiv, 2020 - biorxiv.org | additional density for the holo-SrpI with a 243 homologous cysteine desulfurase dimer docked in ( pdb : 6c9e ) the first Family 2 encapsulin structure and is 267 the highest resolution structure for an Given the structural 271 similarity of the entire shell, it is unsurprising that the SrpI |
| 2 | 3sdo | - | http://onlinelibrary.wiley.com/doi/10.1002/prot.25267/full | Crystal structure of dibenzothiophene sulfone monooxygenase BdsA from Bacillus subtilis WUS2B | 2017 | M Okai, WC Lee, LJ Guan, T Ohshiro - Proteins: Structure, , 2017 - Wiley Online Library | ... Overall structure. ... BdsA also shows structural similarities with the following proteins: putativemonooxygenase Ytnj (PDB ID: 1TVL; Q-score 0.60, not published), nitrilotriacetatemonooxygenase NmoA (PDB ID: 3SDO; Q-score 0.57, not published), EDTA monooxygenase ... |
| 3 | 3mmt | - | http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0156105 | X-Ray Solution Scattering Study of Four Escherichia coli Enzymes Involved in Stationary-Phase Metabolism | 2016 | LA Dadinova, EV Shtykova, PV Konarev, EV Rodina - PloS one, 2016 - journals.plos.org | ... When comparing the predicted structure of FbaB to ten of the closest structural analogs in the PDB, three fructose bisphosphate aldolase homologues were identified (PDB: 1OK6, 3MMT, 3BV4) along with four tagatose bisphosphate aldolases ... |
| 4 | 8dp2 | - | https://www.nature.com/articles/s41467-024-45632-1 | Poly--glutamylation of biomolecules | 2024 | G Bashiri, EMM Bulloch, WR Bramley- Nature, 2024 - nature.com | To produce an FPGS ligand model, MurD, FolC, and FPGS crystal structure coordinates (2UAG, 4UAG, 8DP2, 1W78, and 2VOR) were downloaded from the Protein Data Bank ... structures were overlaid using COOT and appropriate ligands appended to the FPGS structure as indicated by structural and intermolecular contacts in PDB structures 8DP2 and 4UAG, |
| 5 | 5vcu | - | http://www.japsonline.com/admin/php/uploads/2894_pdf.pdf | In-silico study of flavonoids from Cassia tora as potential anti-psoriatic agent | 2019 | I Akachukwu, EE Amara- Journal of Applied Pharmaceutical, 2019 - japsonline.com | 4; CCS ( PDB 5QC5) cathepsin S; JAK-3 ( PDB 5TTS) Janus kinase; RAC-1 ( PDB 5VCU ) Ras-related a vital structural requirement for strong binding with the target proteins The validity of the suggested structure - activity relationship is predicated on the observed reduction of |
| 6 | 3ke1 | - | http://pubs.acs.org/doi/full/10.1021/jm3016816 | Torsion Angle Preferences in Druglike Chemical Space: A Comprehensive Guide | 2013 | C Sch?rfer, T Schulz-Gasch, HC Ehrlich? - Journal of medicinal ?, 2013 - ACS Publications | ... The growing number of entries in the Cambridge Structural Database (CSD)(19) and the ProteinData Bank (PDB)(20) allow derivation of more and more reliable and specific rules, and efficient tools exist to do this.(21, 22) Here we present ... PDB entry 3ke1(39) exemplifies ... |
| 7 | 3o0m | - | http://jb.asm.org/content/early/2017/06/14/JB.00304-17.abstract | The DNA repair repertoire of Mycobacterium smegmatis FenA includes the incision of DNA 5'flaps and the removal of 5'adenylylated products of aborted nick ligation | 2017 | ML Uson, S Ghosh, S Shuman- Journal of bacteriology, 2017 - Am Soc Microbiol | MSMEG_5871 (Rv0759c) has not been characterized. MSMEG_5028 (Rv1262c) has been characterized structurally (PDB entry 3O0M), but its biochemical activity is uncharted. |
| 8 | 3gvc | - | http://www.sciencedirect.com/science/article/pii/S0960852417303887 | Improved xylitol production by expressing a novel D-arabitol dehydrogenase from isolated Gluconobacter sp. JX-05 and co-biotransformation of whole cells | 2017 | X Qi, H Zhang, TA Magocha, Y An, J Yun, M Yang - Bioresource , 2017 - Elsevier | ... Phyre2 (Kelley et al., 2015) was used to predict the 3D structure of ArDH. ..Another two SDR enzymes, short-chain dehydrogenase reductase (PDB ID: 3GVC) of M. tuberculosis and galactitol dehydrogenase (PDB ID: 2WSB) of R. sphaeroides were also used in the superposition of structure modeling. ... |
| 9 | 3k9w | - | http://www.sciencedirect.com/science/article/pii/S1570963916300607 | Transition of phosphopantetheine adenylyltransferase from catalytic to allosteric state is characterized by ternary complex formation in Pseudomonas aeruginosa | 2016 | R Chatterjee, A Mondal, A Basu, S Datta - Biochimica et Biophysica Acta ( , 2016 - Elsevier | ... 5-phosphosulfate [PDB ID: 3OTW, 3NV7] [29] and Burkholderia pseudomallei in complex withhydrolyzed dPCoA [PDB ID: 3K9W] [30]. ... was solved using PHASER [38] and by utilizing E. coliphosphopantetheine adenylyltransferase (1HIT chain A) as a starting structure. ... |
| 10 | 3uam | - | http://pubs.acs.org/doi/abs/10.1021/acs.chemrev.7b00421 | Oxygen Activation by Cu LPMOs in Recalcitrant Carbohydrate Polysaccharide Conversion to Monomer Sugars | 2017 | KK Meier, SM Jones, T Kaper, H Hansson- Chemical, 2017 - ACS Publications | Their activity and structural underpinnings provide insights into biological mechanisms of polysaccharide ... Table 4. AA10 LPMO Structures Available in the Protein Data Bank Burkholderia pseudomallei LPMO10A, BpAA10A 3UAM |