We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 6OMZ | 2019 | 1 |
| 4DS3 | 2012 | 1 |
| 5TGD | 2016 | 1 |
| 3R6H | 2011 | 1 |
| 6OVI | 2019 | 1 |
| 7KDN | 2020 | 1 |
| 3TML | 2011 | 1 |
| 5EPF | 2015 | 1 |
| 8SBO | 2023 | 1 |
| 3TL6 | 2011 | 1 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3u40 | - | http://dx.plos.org/10.1371/journal.pone.0044282 | Insights into Phosphate Cooperativity and Influence of Substrate Modifications on Binding and Catalysis of Hexameric Purine Nucleoside Phosphorylases | 2012 | PO de Giuseppe, NH Martins, AN Meza? - PloS one, 2012 - dx.plos.org | ... Structural superposition of BsPNP233-Ado (magenta carbon atoms), B. cereus adenosine phosphorylase (BcAdoP)-Ado-SO 4 (green carbon atoms, PDB code 3UAW [52]) and Entamoeba histolytica PNP-Ado (cyan carbon atoms, PDB code 3U40 [55]) complexes. ... |
| 2 | 5b8h | - | https://onlinelibrary.wiley.com/doi/abs/10.1002/cmdc.201800652 | Identification of Specific and Nonspecific Inhibitors of Bacillus anthracis TypeIII Pantothenate Kinase (PanK) | 2019 | JA Shapiro, JJ Varga, D Parsonage, W Walton- , 2019 - Wiley Online Library | Organic synthesis of analogues along with biochemical validation of the proposed mechanism will allow structure function analysis and form 2H3G, DOI: 10.2210/pdb2H3G/ pdb ), PaPanK ( PDB ID: 2F9T, DOI: 10.2210/pdb2F9T/ pdb ), and BcPanK ( PDB ID: 5B8H , DOI: 10.2210 |
| 3 | 3eiy | - | http://www.sciencedirect.com/science/article/pii/S1570963914001095 | Asn112 in< i> Plasmodium falciparum</i> glutathione S-transferase is essential for induced reversible tetramerization by phosphate or pyrophosphate | 2014 | I Quesada-Soriano, C Barn, R Tllez-Sanz - et Biophysica Acta (BBA , 2014 - Elsevier | ... the alignment between one of the docking poses for the binding of pyrophosphate to the PfGST tetramer near the Asn112–Lys117 closed-square pattern and three of the pyrophosphatase structures (3Q4W from Thermococcus thioreducens, 3EIY from Burkholderia pseudomallei and 2AUU/1I6T from E. coli), is suspiciously good. ... |
| 4 | 3d6b | - | http://scripts.iucr.org/cgi-bin/paper?S0907444913021859 | Structure of the prolyl-acyl carrier protein oxidase involved in the biosynthesis of the cyanotoxin anatoxin-a | 2013 | K Moncoq, L Regad, S Mann, A Mejean and O Ploux - Acta Crystallographica Section D Biological Crystallography, 2013 - scripts.iucr.org | ... coordinates and structure factors have been deposited in the Protein Data Bank (PDB) as entry ...PDB code, Enzyme, Enzyme class, Source, Identity (%), Similarity (%), Rmsd (?), No. ... 3d6b, Glutaryl-CoA dehydrogenase (apoenzyme), GCD, Burkholderia pseudomallei, 27, 45, 1.88, ... |
| 5 | 3ecd | - | http://www.uib.no/People/nmaxt/papers/pan1.pdf | Model the Solvent-Excluded Surface of 3D Protein Molecular Structures Using Geometric PDE-Based Level-Set Method | 2009 | Q Pan, XC Tai - Communications in Computational Physics, 2009 - uib.no | ... where ? is a very small value and chosen to be O(?x). 3 Numerical implementation 3.1 Initial construction The data of the complex 3D protein molecular structures, saved as pdb format files, can be downloaded from the free website of the protein data bank: http://www.rcsb.org. ... |
| 6 | 4j07 | - | https://kuscholarworks.ku.edu/handle/1808/27856 | Strategies to improve the immunogenicity of subunit vaccine candidates | 2018 | Y Wei - 2018 - kuscholarworks.ku.edu | Oligomeric state of lumazine synthase Quaternary structure Organism PDB ID Pentamer 1DI0 2F59 ; 2I0F 2OBX 2O6H 2JFB 1C41 2VI5; 2C9B; 2C92; 2C94; 2C97; 2C9D; 1W19; 1W29 4J07 1EJB 1KYV; 1KYX; 1KYY Decamer Brucella spp |
| 7 | 5bq2 | - | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5512856/ | Structural insight into the binding of C60-derivatives with enoyl-pyruvate transferase from Helicobacter pylori | 2017 | M Teimouri, M Junaid, A Khan, H Zhang - Bioinformation, 2017 - ncbi.nlm.nih.gov | ... BLAST, UDP-Nacetyl- glucosamine 1-carboxy-vinyl-transferase of Pseudomonas aeruginosa(PDB ID 5BQ2 ... The alignment of 5BQ2 and H. pylori Enoyl pyruvate transferase is given in Figure ...The modeled structure was superimposed on to the template, giving root mean square ... |
| 8 | 5ez3 | - | https://f1000research.com/articles/9-1268 | Characterization of sulfated polysaccharide activity against virulent Plasmodium falciparum PHISTb/RLP1 protein | 2020 | JM Mutisya, VA Mobegi, JK Kinyua, MN Kivecu- , 2020 - f1000research.com | sequences to the reference, 12 non-synonymous single nucleotide polymorphisms were considered for mutant protein structure analysis. Eleven drug compounds with antiplasmodial activity were identified. Both modelled PHISTb/RLP1 reference and mutant structures had a |
| 9 | 3r0o | - | http://link.springer.com/article/10.1007/s00253-015-6551-z | Metabolism of β-valine via a CoA-dependent ammonia lyase pathway | 2015 | M Otzen, CG Crismaru, CP Postema, HJ Wijma… - Applied microbiology …, 2015 - Springer | ... to the Thermus thermophilus PaaG (35 % identity), a predicted 2, 3-dehydroadipyl-CoA hydrataseof which the structure is solved (PDB 3HRX ... searches of the protein encoded by ORF12 showedhomology to Mycobacterium avium carnitinyl-CoA hydratase (3R0O; 48 % identity ... |
| 10 | 5dvw | - | https://core.ac.uk/download/pdf/323470394.pdf | Napovedni modeli za identifikacijo potencialnih inhibitorjev razlinih proteinov virusa ebole | 2020 | V Hudi - 2020 - core.ac.uk | Monte Carlo MLR Multivariatna linearna regresija mRNA Informacijska ribonukleinska kislina NP Nukleoprotein PCA Metoda glavnih komponent PDB Podatkovna knjinica Knowledge of the viral structure gives us insight into the functioning of the virus and allows us to predict |