We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 4XDQ | 2015 | 1 |
| 8DT6 | 2022 | 1 |
| 8DTC | 2022 | 1 |
| 8DU1 | 2022 | 1 |
| 8DUR | 2022 | 1 |
| 4Y0E | 2015 | 1 |
| 4YWE | 2015 | 1 |
| 8EPS | 2022 | 1 |
| 5BT9 | 2015 | 1 |
| 4F3W | 2012 | 1 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 4g7f | 4lsm, 4fzi, 4iv5 | https://link.springer.com/content/pdf/10.1007/s10863-020-09834-8.pdf | Synthesis of new N,S-acetal analogs derived from juglone with cytotoxic activity against Trypanossoma cruzi | 2020 | PAF Pacheco, T de Menezes Ribeiro- Journal of Bioenergetics, 2020 - Springer | Naphthoquinones are considered important structures in medicinal chemistry due to their synthetic versatility and their v.1.0.1 program was used to build the molec- ular structure of ligands the best SI value among all molecules tested indicating that this structural feature might |
| 2 | 5dd7 | - | https://repository.up.ac.za/handle/2263/63284 | Structural and functional analysis of thiaminephosphate and homoserine kinases from Mycobacterium tuberculosis | 2016 | CM Ntui - 2016 - repository.up.ac.za | Figure 3.17 X-ray diffraction pattern obtained from ThiL crystal Figure 3.18 The overall structure of MtbThiL Figure 3.20 Crystals obtained from optimization with ThrB Figure 4.1 Structural topology of MtbThiL with other ThiL structures PDB Protein Data Base pI Isoelectric point |
| 3 | 3v2i | - | http://www.sciencedirect.com/science/article/pii/S2211546314000990 | Crystal structure of peptidyl-tRNA hydrolase from a Gram-positive bacterium, Streptococcus pyogenes at 2.19 Å resolution shows the closed structure of the substrate-binding cleft | 2014 | A Singh, L Gautam, M Sinha, A Bhushan, P Kaur… - FEBS open bio, 2014 - Elsevier | ... 27], Francisella tularensis (FtPth) (PDB: 3NEA) [28] and Burkholderia thailandensis (BtPth) (PDB:3V2I) [29]. ... tripeptide (grey) from the neighbouring molecule from the structure of EcPth (PDB ID:2PTH ... with the stereochemistry of the substrate binding cleft in the structure of SpPth ... |
| 4 | 6c9e | - | https://www.biorxiv.org/content/10.1101/2020.05.24.113720v1.abstract | Discovery and characterization of a novel family of prokaryotic nanocompartments involved in sulfur metabolism | 2020 | RJ Nichols, B LaFrance, NR Phillips, LM Oltrogge- bioRxiv, 2020 - biorxiv.org | additional density for the holo-SrpI with a 243 homologous cysteine desulfurase dimer docked in ( pdb : 6c9e ) the first Family 2 encapsulin structure and is 267 the highest resolution structure for an Given the structural 271 similarity of the entire shell, it is unsurprising that the SrpI |
| 5 | 5k9f | - | https://www.nature.com/articles/s41419-025-08070-5 | TRIM17 promotes the progression of osteosarcoma by regulating PDK1 m6A modification-mediated AKT/mTOR pathway activation through ubiquitination of FTO | 2025 | W Liu, D Zheng, X Huang, Z Wei, Z Wei, W Guo- Cell death & disease, 2025 - nature.com | Download the three-dimensional structures of TRIM17 (ID: 6Z08) and FTO (ID: 5K9F ) from the PDB database, and remove the ligands and water molecules. The amino acid residues |
| 6 | 3nfw | - | http://scripts.iucr.org/cgi-bin/paper?dp5021 | Crystallization and preliminary X-ray analysis of the reductase component of p-hydroxyphenylacetate 3-hydroxylase from Acinetobacter baumannii | 2012 | W Oonanant, J Sucharitakul, P Chaiyen? - Acta Crystallographica Section F Structural Biology and Crystallization Communications, 2012 - scripts.iucr.org | ... All of these structures share the same protein fold and lack the extra C-terminal domain found in C 1 . Recently, the structure of NTA monooxygenase component B from Mycobacterium thermoresistibile (PDB entry 3nfw ; Zhang et al., 2011 [Zhang, Y., Edwards, TE, Begley, DW ... |
| 7 | 3qdf | - | http://scripts.iucr.org/cgi-bin/paper?hc5132 | Expression, purification, crystallization and preliminary crystallographic analysis of Cg1458: a novel oxaloacetate decarboxylase from Corynebacterium glutamicum | 2011 | T Ran, Y Wang, D Xu, W Wang - Acta Crystallographica Section F Structural Biology and Crystallization Communications, 2011 - scripts.iucr.org | ... was collected at 1.9 ? resolution using synchrotron radiation on beamline BL17U of SSRF, Shanghai, China. Structure-solution attempts by molecular replacement were successful with PDB entries 3qdf or 2dfu as the template. ... |
| 8 | 3cxk | - | http://onlinelibrary.wiley.com/doi/10.1002/pmic.201300357/full | Unraveling the specificities of the different human methionine sulfoxide reductases | 2014 | E Vandermarliere, B Ghesquire, V Jonckheere - , 2014 - Wiley Online Library | ... In a first step, all human protein structures determined by X-ray crystallography were retrieved from the Protein Data Bank (PDB) [30]. ... With the aid of a BLAST search [33] against the PDB, the possible templates were shortlisted and PDB-entry 3CXK [34] was chosen as a ... |
| 9 | 4ex5 | - | http://pubs.acs.org/doi/abs/10.1021/jp511585w | Dynamics of the Active Sites of Dimeric Seryl t RNA Synthetase from Methanopyrus kandleri | 2015 | S Dutta, N Nandi - The Journal of Physical Chemistry B, 2015 - ACS Publications | ... (j) Class II AsnRS (11AS.pdb) from Escherichia coli. (k) Class II LysRS (4EX5.pdb) of speciesBurkholderia thailandesis. ... The dimeric structure of SerRS from methanogenic Methanopyruskandleri ( mk SerRS) is interesting for the following reasons. ... |
| 10 | 3khp | - | http://scripts.iucr.org/cgi-bin/paper?rl5046 | Cloning, overexpression, purification, crystallization and preliminary X-ray diffraction analysis of Rv0241c (HtdX) from Mycobacterium tuberculosis H37Rv | 2013 | R Biswas, D Dutta, AK Das - Acta Crystallographica Section F: Structural Biology and Crystallization Communications, 2013 - scripts.iucr.org | ... PDB entry, Identity (%), Query cover (%), Reference. 1pn2, 47, 10, Koski et al. (2004 [Koski, MK, Haapalainen, AM, Hiltunen, JK & Glumoff, T. (2004). ... F66, 272-274.] ). 3khp, 36, 19, Seattle Structural Genomics Center for Infectious Disease (unpublished work). 3oml, 33, 37, Haataja ... |