We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 6CKT | 2018 | 1 |
| 3SWX | 2011 | 1 |
| 7K47 | 2020 | 1 |
| 5JRY | 2016 | 1 |
| 6BZC | 2018 | 1 |
| 5DXD | 2015 | 1 |
| 7K62 | 2021 | 1 |
| 5JTK | 2016 | 1 |
| 4EXQ | 2012 | 1 |
| 7K74 | 2020 | 1 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3gvf | - | http://cdn.intechopen.com/pdfs-wm/46885.pdf | From Tilings to FibersBio-mathematical Aspects of Fold Plasticity | 2014 | C Lesieur, L Vuillon - 2014 - cdn.intechopen.com | ... According to the PDB (Protein Data Bank [30] ) where all available atomic structures of proteins are stored ... x-ray structure of the cholera toxin B pentamer (CtxB5) is shown (PDB code 3CHB). ... Example with the protein 3GVF (PDB code), a D3 symmetry oligomer made of 6 chains ... |
| 2 | 3uw1 | - | https://dspace.cuni.cz/handle/20.500.11956/79446 | Understanding the interaction of antibodies and transcription factors with their ligands through structural biology | 2015 | J kerlov - 2015 - dspace.cuni.cz | One such enzyme, ribose-5-phosphate isomerase A from Burkholderia thailandensis (PDB code 3UW1 [157]) also binds its substrate ribose-5-phospate in a linear form in an orientation very similar to that of deoxyribose-5-phosphate in C-DeoR |
| 3 | 3u0g | - | http://www.sciencedirect.com/science/article/pii/S0141022916301995 | A Novel highly thermostable branched-chain amino acid aminotransferase from the crenarchaeon Vulcanisaeta moutnovskia | 2017 | TN Stekhanova, AL Rakitin, AV Mardanov - Enzyme and Microbial , 2017 - Elsevier | ... The first X-ray diffraction structure of BCATs, namely, the structure of BCAT ... The search for close homologues of VMUT0738 using BLAST showed the highest levels of identity with hypothetical BCATs from other members of the genera Vulcanisaeta … The homologues with known structures were TUZN1299 from T. uzoniensis (PDB ID 5CE8, 54% identity, query cover 94%), putative BCAT from Burkholderia pseudomallei (PDB ID 3U0G, 47% identity, query cover 94% ... |
| 4 | 3ecd | - | http://www.uib.no/People/nmaxt/papers/pan1.pdf | Model the Solvent-Excluded Surface of 3D Protein Molecular Structures Using Geometric PDE-Based Level-Set Method | 2009 | Q Pan, XC Tai - Communications in Computational Physics, 2009 - uib.no | ... where ? is a very small value and chosen to be O(?x). 3 Numerical implementation 3.1 Initial construction The data of the complex 3D protein molecular structures, saved as pdb format files, can be downloaded from the free website of the protein data bank: http://www.rcsb.org. ... |
| 5 | 5ucm | - | https://books.google.com/books?hl=en&lr=&id=0-L7DwAAQBAJ&oi=fnd&pg=PA69&dq=%225U... | trans-Editing by aminoacyl-tRNA synthetase-like editing domains | 2020 | ABK Nagy, M Bakhtina- Biology of Aminoacyl, 2020 - books.google.com | bound by an autonomous trans- editing factor, such as C. crescentus ProXp-ala ( PDB ID: 5VXB PheRS is also unique in its oligomeric structure it is a heterote- tramer domain ( bound in an editing active conformation will be needed to fully understand the structural basis for |
| 6 | 3laa | - | https://www.sciencedirect.com/science/article/pii/S1047847719301728 | Structure of the UspA1 protein fragment from Moraxella catarrhalis responsible for C3d binding | 2019 | KM Mikula, R Kolodziejczyk, A Goldman- Journal of structural biology, 2019 - Elsevier | 2012) as found in SadA (2YO2, 2YNZ) (Hartmann et al., 2012) or BpaA ( 3LAA ) (Edwards et CCP4 package (Winn et al., 2011) with the structure of UspA1 165366 ( PDB : 3PR7) (Agnew Model of UspA1 299452 structure solved in this study, neck and coiled-coil domains; chain |
| 7 | 3md7 | - | http://pubs.acs.org/doi/abs/10.1021/bi500406h | Dual specificity and novel structural folding of yeast phosphodiesterase-1 for hydrolysis of second messengers cAMP and cGMP | 2014 | Y Tian, W Cui, M Huang, H Robinson, Y Wan - Biochemistry, 2014 - ACS Publications | ... structure. The atomic model was built with O(39) and refined with REFMAC.(40). The yPDE1 structure was compared with structures in the Protein Data Bank by the online program Dali (http://www.ebi.ac.uk/Tools/structure/dalilite). ... |
| 8 | 4gl8 | - | http://mbio.asm.org/content/8/6/e02047-17.short | Peptide Uptake Is Essential for Borrelia burgdorferi Viability and Involves Structural and Regulatory Complexity of its Oligopeptide Transporter | 2017 | AM Groshong, A Dey, I Bezsonova, MJ Caimano- mBio, 2017 - Am Soc Microbiol | Structural features distinguish BbOppA4 from Gram-negative and Gram-positive OBPs.We took advantage of the crystal structure of BbOppA4 ( PDB ID: 4GL8 ) (39) to determine if B. burgdorferi OBPs possess structural elements compatible with promiscuous peptide binding, the |
| 9 | 3rqi | - | http://pubs.acs.org/doi/abs/10.1021/acs.biochem.6b00645 | A variable active site residue influences the kinetics of response regulator phosphorylation and dephosphorylation | 2016 | RM Immormino, RE Silversmith, RB Bourret - Biochemistry, 2016 - ACS Publications | ... reaction kinetics by altering access to the active site while not perturbing overall protein structure . ... Collectively, our biochemical and structural analyses indicate that position T+1 affects access to the ... (A) Surface representation of the E. coli CheY active site ( PDB entry 1fqw). ... |
| 10 | 3grp | 3f9i | http://dx.plos.org/10.1371/journal.pone.0105751 | BdcA, a Protein Important for Escherichia coli Biofilm Dispersal, Is a Short-Chain Dehydrogenase/Reductase that Binds Specifically to NADPH | 2014 | DM Lord, AU Baran, TK Wood, W Peti, R Page - PloS one, 2014 - dx.plos.org | ... Table 2. BdcA structural homologs as determined by DALI and FFAS. ... Indeed, the same loopsare disordered in the protein whose structure is most similar to BdcA, Bartonella henselae FabG(PDB 3GRP; Table 2) and Rickettsia prowazekii FabG (PDB 3F9I; Table 2) [14]. ... |