We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 8SBW | 2023 | 1 |
| 4HR3 | 2012 | 1 |
| 5UF2 | 2017 | 1 |
| 5UXX | 2018 | 1 |
| 5UY7 | 2017 | 1 |
| 8SC0 | 2023 | 1 |
| 5VL1 | 2017 | 1 |
| 5VPR | 2017 | 1 |
| 5VRB | 2017 | 1 |
| 5VT6 | 2017 | 1 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3oks | 3r4t | http://scripts.iucr.org/cgi-bin/paper?tb5051 | Structures of a gamma-aminobutyrate (GABA) transaminase from the s-triazine-degrading organism Arthrobacter aurescens TC1 in complex with PLP and with its external aldimine PLP-GABA adduct | 2012 | H Bruce, A Nguyen Tuan? - Acta Crystallographica Section F Structural Biology and Crystallization Communications, 2012 - scripts.iucr.org | ... Acta Cryst. D66, 22-25.] ) with a monomer of the transaminase from Mycobacterium smegmatis (PDB entry 3oks ; 63% amino-acid sequence identity to A1R958; Seattle Structural Genomics Center for Infectious Disease, unpublished work) as a search model. ... |
| 2 | 6d9y | 6d9n | http://search.ebscohost.com/login.aspx?direct=true&profile=ehost&scope=site&auth... | Protein secondary structure online server predictive evaluation | 2019 | - Chinese Journal of Bioinformatics, 2019 - search.ebscohost.com | 1 SPIDER Fig.1 Main structure of SPIDER 2.1 |
| 3 | 6bfu | 6nb4 | https://www.biorxiv.org/content/10.1101/2020.03.04.976258v1.abstract | Cryo-electron microscopy structure of the SADS-CoV spike glycoprotein provides insights into an evolution of unique coronavirus spike proteins | 2020 | S Ouyang- BioRxiv, 2020 - biorxiv.org | lower and outer side of S1-CTDs arranged as a big triangle. This architecture , 157 ie, CTD sandwiched by its own NTD and the adjacent NTD, comes into being 158 189 (G). Cryo-EM structure of SADS-CoV S monomeric subunit. The structural 190 |
| 4 | 3sbx | 3qh8 | http://onlinelibrary.wiley.com/doi/10.1002/prot.25328/full | Deciphering common recognition principles of nucleoside mono/di/and triphosphates binding in diverse proteins via structural matching of their binding sites | 2017 | R Bhagavat, N Srinivasan - Proteins: Structure, , 2017 - Wiley Online Library | ... The super-types are S1) 3CYI, 3HYO, 2ZKJ, 3QUR, 3SBX , 3PNL and 2QV7; S2) 3T7M, 3L31, 3EVD, 3QXH, 3H5N and 2B56; ... classification of this type groups the set of known NTP binding sites in PDB , which are more ... PROTEINS: Structure , Function, and Bioinformatics ... |
| 5 | 3laa | 4lgo, 3s6l | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7688925/ | Non-adaptive evolution of trimeric autotransporters in Brucellaceae | 2020 | MR Rahbar, M Zarei, A Jahangiri, S Khalili- Frontiers in, 2020 - ncbi.nlm.nih.gov | domain from Haemophilus influenzae genome ( PDB ID:1S7M; Yeo et al., 2004); structure of the parallel beta-roll collagen-binding domain of Yersinia enterocolitica adhesin YadA ( PDB ID: 1P9H Batch analyzes of the dataset suggested the existence of a few structural domains |
| 6 | 3d64 | 3glq, 3n58 | http://pubs.acs.org/doi/abs/10.1021/acs.jcim.5b00299 | An Inexpensive Method for Selecting Receptor Structures for Virtual Screening | 2015 | Z Huang, CF Wong - Journal of chemical information and , 2015 - ACS Publications | ... SPI also performed better than the best docking energy, the molecular volume of thebound ligand, and the resolution of crystal structure in selecting good receptorstructures for virtual screening. The implications of these findings ... |
| 7 | 3i4e | 3p0x | http://link.springer.com/article/10.1007/s11274-013-1258-8 | Residues Asn214, Gln211, Glu219 and Gln221 contained in the subfamily 3 catalytic signature of the isocitrate lyase from Pseudomonas aeruginosa are involved in its catalytic and thermal properties | 2013 | J Campos-Garcia, C Diaz-Perez? - World Journal of Microbiology and Biotechnology, 2013 - Springer | ... The ICL-Pa model in the open state was built using homologous ICL from A. nidulans (PDB 1DQU), Burkholderia pseudomallei (PDB 3I4E), and E. coli (PDB 1IGW), whereas the closed state model was built using the closed model of a homologous ICL from Brucella melitensis ... |
| 8 | 3tmg | 4z9n, 4f3p | https://www.biorxiv.org/content/10.1101/2021.01.27.428399v1.abstract | Gating the channel pore of ionotropic glutamate receptors with bacterial substrate binding proteins | 2021 | M Bernhard, B Laube- bioRxiv, 2021 - biorxiv.org | The bacterial GluR0 receptor was chosen due to its less complex architecture compared to eukaryotic iGluRs, characterized by the lack of an NTD, a Therefore, we used the structure of the glutamate-bound closed GluR0-LBD conformation (Mayer et al., 2001) ( PDB ID |
| 9 | 3ld9 | 3v9p | http://scripts.iucr.org/cgi-bin/paper?S1744309112050208 | Cloning, expression, purification, crystallization and preliminary X-ray crystallographic study of thymidylate kinase (TTHA1607) from Thermus thermophilus HB8 | 2013 | SK Chaudhary, J Jeyakanthan? - Acta Crystallographica Section F Structural Biology and Crystallization Communications, 2013 - scripts.iucr.org | ... aureus (PDB entry 4f4i ; Midwest Center for Structural Genomics, unpublished work), Burkholderia thailandensis (PDB entry 3v9p ; Seattle Structural Genomics Center for Infectious Disease, unpublished work) and Ehrlichia chaffeensis (PDB entry 3ld9 ; Leibly et al., 2011 [Leibly ... |
| 10 | 4hjh | 3uw2 | http://www.sciencedirect.com/science/article/pii/S1876162317300366 | Biology, Mechanism, and Structure of Enzymes in the -d-Phosphohexomutase Superfamily | 2017 | KM Stiers, AG Muenks, LJ Beamer - in Protein Chemistry and Structural , 2017 - Elsevier | ... Enzymes in the α-d-phosphohexomutases superfamily catalyze the reversible conversion of phosphosugars, such as glucose 1-phosphate and glucose 6-phosphate. These reactions are fundamental to primary metabolism across the kingdoms of life and are required for a myriad of cellular processes, ... |