We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 3U0B | 2011 | 1 |
| 4V6H | 2009 | 1 |
| 6CK7 | 2018 | 1 |
| 6DLY | 2019 | 1 |
| 6XNQ | 2020 | 1 |
| 3QLJ | 2011 | 1 |
| 5UXX | 2018 | 1 |
| 5UY7 | 2017 | 1 |
| 6DJK | 2019 | 1 |
| 4F3W | 2012 | 1 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 4g6c | 4gnv | http://onlinelibrary.wiley.com/doi/10.1002/pro.3166/full | Conformational flexibility of the glycosidase NagZ allows it to bind structurally diverse inhibitors to suppress lactam antibiotic resistance | 2017 | G Vadlamani, KA Stubbs, J Dsir, Y Blriot - Protein , 2017 - Wiley Online Library | ... iMosflm,[31] then scaled and averaged using SCALA (CCP4 package).[32] The BcNagZ:inhibitorcomplex structures were determined by molecular replacement using PHASER (from within thePHENIX package)[33] and a structure of BcNagZ (PDB ID: 4G6C) ...The position of the loop is also consistent with a previous structure of BcNagZ bound to the non-selective N-acetyl-β-glucosaminidase inhibitor 3-acetamido-4,5,6-trihydroxyazepane MM-124 (PDB ID: 4MSS)[9] and the product GlcNAc (PDB ID: 4GNV), indicating that ... |
| 2 | 4djt | - | http://link.springer.com/chapter/10.1007/978-3-7091-1806-1_2 | The Structure of the G Domain of the Ras Superfamily | 2014 | IR Vetter - Ras Superfamily Small G Proteins: Biology and …, 2014 - Springer | ... series) (24 PDB files, 31 chains). ... The structure of an orthologue of Ran from Encephalitozooncuniculi (4djt, unpublished) has all GTP-interacting motifs including the catalytic glutamineconserved. It was crystallized in the GDP-bound form. ... Structure/Fold Des 15(12):1618–1629. |
| 3 | 3v7o | 4g50 | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5256280/ | Design of an expression system to enhance MBP-mediated crystallization | 2017 | T Jin, W Chuenchor, J Jiang, J Cheng, Y Li - Scientific , 2017 - ncbi.nlm.nih.gov | ... 25 , GST 26 , TRX 27 , green fluorescent protein (GFP) 28 ,29 , SUMO (pdb: 3V7O and 4G50 ...platform is increasingly appreciated 38 ,39 , the optimal sequence, length, and structure of the ...The death domain superfamily is a structural motif found in many proteins that are involved ... |
| 4 | 3nxs | - | http://www.sciencedirect.com/science/article/pii/S1046592813002568 | Strategies for purifying variants of human rhinovirus 14 2C protein | 2014 | T S?ra, R Konrat, T Skern - Protein expression and purification, 2014 - Elsevier | ... Score, Entry name, PDB identifier. 6198, Human nuclear valosin containing protein like (Nvl), C-terminal AAA?ATPase domain, 2X84. ... 2887, Crystal structure of LAO/AO transport system from Mycobacterium smegmatis bound to GDP, 3NXS. ... |
| 5 | 3s6l | - | https://www.frontiersin.org/articles/10.3389/fbioe.2020.613986/pdf | Modelled structure of the cell envelope proteinase of Lactococcus lactis | 2020 | EB Hansen, P Marcatili- Frontiers in bioengineering and, 2020 - frontiersin.org | The architecture of the L. lactis CEP shares features with a large number of serine proteases to use current state of the art structure prediction algorithms to establish a structural model of software (version 2.3.3)2 was used for visualization and editing of protein structure PDB files |
| 6 | 3ijp | - | http://www.biochemj.org/content/early/2017/11/28/BCJ20170709.abstract | Plant DHDPR forms a dimer with unique secondary structure features that preclude higher order assembly | 2017 | SAJ Watkin, JR Keown, E Richards- Biochemical, 2017 - biochemj.org | Cirilli, M., Zheng, RJ, Scapin, G., and Blanchard, JS (2003) The three-dimensional structures of the Structural and mutagenic analysis of relaxed nucleotide specificity Scapin, G., Reddy, SG, Zheng, R., and Blanchard, JS (1997) Three-dimensional structure 490 of Escherichia |
| 7 | 3qdf | 4qku, 3rr6, 4maq, 4pfz, 3r6o | http://pubs.acs.org/doi/abs/10.1021/acs.biochem.6b00050 | Crystal structures of apo and liganded 4-oxalocrotonate decarboxylase uncover a structural basis for the metal-assisted decarboxylation of a vinylogous -keto acid | 2016 | SL Guimares, JB Coitinho, DMA Costa, SS Arajo - Biochemistry, 2016 - ACS Publications | ... Analysis of the crystal structures implicates a lid domain in substrate binding and suggests roles for ... Representative tertiary and quaternary structures of enzymes from (A) Mus musculus (PDB entry 1QCN(30)) and Burkholderia cenocepacia (PDB entry 4QKU); (B) Sulfolobus solfataricus (PDB entry 2Q18(32)); (C) Mycobacterium marinum (PDB entry 3QDF(39)) ... |
| 8 | 5ez3 | - | https://f1000research.com/articles/9-1268 | Characterization of sulfated polysaccharide activity against virulent Plasmodium falciparum PHISTb/RLP1 protein | 2020 | JM Mutisya, VA Mobegi, JK Kinyua, MN Kivecu- , 2020 - f1000research.com | sequences to the reference, 12 non-synonymous single nucleotide polymorphisms were considered for mutant protein structure analysis. Eleven drug compounds with antiplasmodial activity were identified. Both modelled PHISTb/RLP1 reference and mutant structures had a |
| 9 | 3ecd | - | http://www.uib.no/People/nmaxt/papers/pan1.pdf | Model the Solvent-Excluded Surface of 3D Protein Molecular Structures Using Geometric PDE-Based Level-Set Method | 2009 | Q Pan, XC Tai - Communications in Computational Physics, 2009 - uib.no | ... where ? is a very small value and chosen to be O(?x). 3 Numerical implementation 3.1 Initial construction The data of the complex 3D protein molecular structures, saved as pdb format files, can be downloaded from the free website of the protein data bank: http://www.rcsb.org. ... |
| 10 | 6c5v | - | https://books.google.com/books?hl=en&lr=&id=32CqDwAAQBAJ&oi=fnd&pg=PA313&dq=%226... | Gammaherpesvirus entry and fusion: A tale how two human pathogenic viruses enter their host cells | 2019 | BS Mhl, J Chen, R Longnecker- Adv. Virus Res, 2019 - books.google.com | 323 Gammaherpesvirus entry and fusion (Waterhouse et al., 2018) based on the crystal structures of EBV gB ( PDB ID: 3FVC), gH ( 6C5V ) and gL The structural sequence alignment of EBV and KSHV gB based on the crystal structure of EBV gB (3FVC)(Backovic et al., 2009 |