We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 7TY0 | 2022 | 0 |
| 7TXZ | 2022 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3qxz | 3moy, 4qfe, 5ji5, 5b8i, 3pk0, 3rsi | https://discovery.dundee.ac.uk/ws/portalfiles/portal/28493615/127050.full.pdf | Human Missense Variation is Constrained by Domain Structure and | 2017 | SA MacGowan, F Madeira, T Britto-Borges - discovery.dundee.ac.uk | the protein structure level. Figure 2B shows that this result extends to other protein 109 For 182 an example see Glu 295 and Ser 332 in PDB ID: 3e00 chain D.).21 These important 183 Glu370 that recent structural studies suggest is at the interface with Ubiquitin22 and so 187 |
| 2 | 3qk8 | 3q1t | https://repository.library.northeastern.edu/files/neu:m044c4387/fulltext.pdf | Functional Characterization of Structural Genomics Proteins through Computed Chemical Properties, Graph Representation of Active Sites, and Biochemical | 2018 | CL Mills - 2018 - search.proquest.com | These five proteins were purified separately using the same protocol: two putative enoylCoA hydratases from Streptomyces avermitilis (PDB 3GKB, gene echA1; PDB 3H0U, gene echA2), putative 3-hydroxybutyryl-CoA dehydratase from Rhodopseudomonas palustris (PDB 3HIN, gene RPA1786), putative enoyl-CoA hydratase from Mycobacterium avium (PDB 3Q1T, gene MAV_3574), and putative enoyl-CoA hydratase from Mycobacterium marinum (PDB 3QK8, gene echA15). |
| 3 | 5ids | - | https://digitalcommons.augustana.edu/biolmruber/28/ | Mrub_2052, Mrub_0628, and Mrub_2034 genes are predicted to be orthologous to b0688, b2039, and b3789 genes found in Escherichia coli, which are involved in | 2017 | JP Hartnett, D Scott - 2017 - digitalcommons.augustana.edu | (Finn et al.). Protein Data Bank ( PDB ) (Berman et. al., 2000) is a curated collection of crystalized proteins.If a PDB hit is obtained for a query sequence, then 3-D structure neighbors, Page 7. 6 PDB protein database 5IDS Glucose-1-phosphate Thymidylyltransferase |
| 4 | 3u04 | - | http://pubs.rsc.org/is/content/articlehtml/2016/ra/c6ra01071g | Molecular modeling of Plasmodium falciparum peptide deformylase and structure-based pharmacophore screening for inhibitors | 2016 | A Manhas, SP Kumar, PC Jha - RSC Advances, 2016 - pubs.rsc.org | ... PDB entry, Organism, Resolution (), Metal ion, E-Value, Identity ... 5, 3U04, Ehrlichia chaffeensis,1.70, Zn 2+, 3 10 28, 37. ... actinonin complex created from superimposition was manually editedto replace with the Fe 2+ ion to generate the PfPDFFe 2+ actinonin complex structure ... |
| 5 | 3glq | - | http://xb.cnjournals.com/hnndzr/ch/reader/create_pdf.aspx?file_no=2016010308&fla... | Biological activity on cordycepin and cordycepin triphosphate based on the reverse molecular docking | 2016 | Gong, Guocai , Ling et al. - (J. Hunan Agr. Un. (Nat Sci) ), 2016 - xb.cnjournals.com | 12.83 3IID 8.89 2XZL 12.35 1ZOS 8.85 3LBN 12.34 3GLQ 8.75 1F2U 1QQO PDB 1 ADP Fig.1 Comparison the structure conformation |
| 6 | 4dut | - | http://dndx.cnjournals.com/html/2015/3/20140319.htm | Structural and Functional Characterization of Acinetobacter baumannii Nucleoside Diphosphate Kinase | 2015 | Progress in Biochemistry and Biophysics, 2015, 42(3): 260-267 | ... 82.12. 2.4 Structure determination and refinement. Initially,wild type structurewas determined by molecular replacement (MR) method using Burkholderiathailandensis NDK (PDB code 4DUT) as starting model. After ... |
| 7 | 3o0m | - | http://search.proquest.com/openview/769ccf38b4f4380a7bc1930f51547727/1?pq-origsi... | Characterization of Mycobacterial Flap Endonuclease FenA and RNA Helicase HelY | 2018 | MLL Uson - 2018 - search.proquest.com | There, she focused on the detection of circulating tumor cells and structural characterization of EphA3, a 122 Figure 4.3 Manganese ions in the FenA active site ..... 126 Figure 4.4 Active site architecture and structure -guided mutagenesis |
| 8 | 4npc | - | https://www.ingentaconnect.com/contentone/govi/pharmaz/2019/00000074/00000002/ar... | Synthesis and antibacterial activity of novel icariin derivatives | 2019 | A Wang, Y Xu- Die Pharmazie-An International Journal of, 2019 - ingentaconnect.com | The X-ray structure of MetAP1 ( PDB : 4npc ) was also obtained from Protein Databank ( PDB ). Before going to the docking procedure, the protein structure was prepared using the Protein preparation wizard of the DS 2017 R2 |
| 9 | 3tl6 | - | https://link.springer.com/chapter/10.1007/978-3-319-23497-7_13 | Basic Exploratory Proteins Analysis with Statistical Methods Applied on Structural Features | 2015 | E Del Prete, S Dotolo, A Marabotti- Mathematical Models in, 2015 - Springer | 1JP7, 1M73, 1ODK, 1PK9, 1QE5, 1TCU, 1V4N, 1VMK, 1XE3, 1Z33, 2P4S, 3KHS, 3OZE, 3SCZ, 3TL6 , 3UAV, 4D98 2. Different online and local tools have been used to extract protein structural properties from PDB files: Vadar [15], for secondary structure (also confirmed |
| 10 | 4kyx | - | http://www.cell.com/molecular-plant/abstract/S1674-2052(17)30305-2 | Structural Insights into the Substrate Recognition Mechanism of Arabidopsis GPP-Bound NUDX1 for Noncanonical Monoterpene Biosynthesis | 2018 | J Liu, Z Guan, H Liu, L Qi, D Zhang, T Zou, P Yin- Molecular plant, 2018 - cell.com | the structure by molecular replacement based on the available coordinates (MutT, PDB : 53 4KYX ) and refined the structure at a resolution of 1.39 (Supplemental Table 1). Most of 54 such as FPP. Furthermore, our findings provide new opportunities for structure -guided 156 |