We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 8CTR | 2022 | 0 |
| 8CU5 | 2022 | 0 |
| 8CU9 | 2022 | 0 |
| 4O8K | 2014 | 0 |
| 7U5Q | 2022 | 0 |
| 7U5F | 2022 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 4g7f | - | http://pubs.rsc.org/-/content/articlehtml/2017/mb/c7mb00252a | Insights into the Giardia intestinalis enolase and human plasminogen interaction | 2017 | R Aguayo-Ortiz, P Meza-Cervantez, R Castillo- Molecular, 2017 - pubs.rsc.org | ... P-BLAST analysis showed that T. brucei brucei ( PDB ID: 2PU1) and T. cruzi ( PDB ID: 4G7F ) exhibited the highest ... (B) Sequence alignment of the proposed HsPLG binding sites (highlighted in orange boxes) in the different organisms, (C) 3D structure superposition and ... |
| 2 | 3meq | - | http://onlinelibrary.wiley.com/doi/10.1111/j.1365-2958.2011.07914.x/full | Furfural reduction mechanism of a zinc-dependent alcohol dehydrogenase from Cupriavidus necator JMP134 | 2012 | CH Kang, R Hayes, EJ Sanchez, BN Webb? - Molecular Microbiology, 2012 - Wiley Online Library | ... through the coordinates of ADH from Brucella melitensis (3MEQ). Iterative model building and refinement took place using the programs coot (Emsley et al., 2010) and phenix (Adams et al., 2010). All FurX coordinates have been deposited in the Protein Data Bank: 3S1L (apo ... |
| 3 | 6q06 | - | https://www.biorxiv.org/content/10.1101/2021.04.14.439284v1.abstract | Cryptic SARS-CoV2-spike-with-sugar interactions revealed by'universal'saturation transfer analysis | 2021 | CJ Buchanan, B Gaunt, PJ Harrison, A Le Bas, A Khan- bioRxiv, 2021 - biorxiv.org | computational modelling environments provide exact structural models. In this way, uSTA analysis provides an automated pipeline from raw NMR free induction decay (FID) signals all the way to proteinligand structures in a freely available form for the non-expert |
| 4 | 5tw7 | - | https://www.biorxiv.org/content/10.1101/808618v2.full-text | Helices on interdomain interface couple catalysis in the ATPPase domain with allostery in Plasmodium falciparum GMP synthetase | 2020 | S Shivakumaraswamy, N Pandey, L Ballut, S Violot- bioRxiv, 2020 - biorxiv.org | Experimental Procedures. Sequence and structure analysis The PDB IDs of the structures of GMPS analyzed are 1GPM (Escherichia coli), 3TQI (Coxiella burnetii), 2YWB and 2YWC (Thermus thermophilus), 5TW7 (Neisseria gonorrhoeae), 2VXO (Homo sapiens), 3UOW |
| 5 | 4yk1 | - | http://www.superfri.org/superfri/article/view/171 | High performance computing with coarse grained model of biological macromolecules | 2018 | EA Lubecka, AK Sieradzan, C Czaplewski- Supercomputing, 2018 - superfri.org | The source code in the UNRES package with Fortran 90 has the following directory structure : unres (main program modules, source NucB (110 residues, single chain, PDB code: 5OMT), BID domain of Bep6 (137 residues, single chain, PDB code: 4YK1 ), CDI complex |
| 6 | 4pq9 | - | http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4606783/ | Crystal structural basis for Rv0315, an immunostimulatory antigen and inactive beta-1, 3-glucanase of Mycobacterium tuberculosis | 2015 | W Dong, J Huang, Y Li, Y Tan, Z Shen, Y Song - Scientific , 2015 - ncbi.nlm.nih.gov | ... was solved at a resolution of 1.7 by molecular replacement using the structure of-1,3-glucanase from Mycobacterium marinum (PDB code 4PQ9) as a ... Other than the differentsize of the cavity, the overall structure of Rv0315 was similar to that of ZgLamA GH16 (Fig. ... |
| 7 | 4h51 | - | http://www.sciencedirect.com/science/article/pii/S0166685115300311 | Structural basis for the relaxed substrate selectivity of Leishmania mexicana broad specificity aminotransferase | 2015 | J Wen, C Nowicki, W Blankenfeldt - Molecular and biochemical , 2015 - Elsevier | ... The most similar structure, however, is that of a putative aspartate aminotransferasefrom Leishmania major Friedlin (LmajASAT, PDB entry 4H51 [16]), which was notavailable when we first determined the structure of LmexBSAT. ... |
| 8 | 3sth | - | http://search.proquest.com/openview/1229867efa30e82724b2b406c14ae6d7/1?pq-origsi... | Deciphering the mechanism and function of stage-specific protein association with the membrane cytoskeleton of Toxoplasma gondii | 2017 | R Dubey - 2017 - search.proquest.com | Crystal structure data of TgGAPDH1 Crystal structure data collection and refinement statistics of Toxoplasma GAPDH1, PDB code 3STH Crystallographic structures of the seven selected GAPDH proteins are solved and deposited in PDB . 62 Structure of TgGAPDH1 protein |
| 9 | 3tv2 | - | http://onlinelibrary.wiley.com/doi/10.1002/cmdc.201390041/full | Inside Cover: CONFECT: Conformations from an Expert Collection of Torsion Patterns (ChemMedChem 10/2013) | 2013 | C Sch?rfer, T Schulz-Gasch, J Hert? - ?, 2013 - Wiley Online Library | ... frequency histograms (top left). One of the bioactive conformations of AMP is shown in the binding site of the protein from PDB complex 3TV2 (bottom right). For more details, see the Full Paper by Matthias Rarey et al. on p. 1690 ff. ... |
| 10 | 4ix8 | - | https://repositorio.uam.es/handle/10486/673429 | Caracterizacin estructural y funcional de la tirosina aminotransferasa de leishmania infantum | 2016 | M Moreno Izquierdo - 2016 - repositorio.uam.es | ... Consequently the PLP-bonded structure of this enzyme was solved by X-raycrystallography at 2.35 of resolution. A comprehensive basis for the mechanismof the transamination in the active center allowed a structure-based ... |