We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 9YL5 | 2025 | 0 |
| 7K5Z | 2020 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 2kwl | 2l4b | http://etheses.whiterose.ac.uk/id/eprint/7720 | Cloning, expression and characterisation of the starter module from indanomycin biosynthesis | 2014 | SR Derrington - 2014 - etheses.whiterose.ac.uk | Both structure calculations produced comparable structures for IdmK. The structure 137 4.5 Structure determination using NMR spectroscopy ..... 139 4.5.1 Initial analysis of the suitability of IdmK for structural studies by NMR ... Further validation was carried by comparison with known canonical acyl carrier protein folds (PDB codes: 1HY8, 1T8K, 1VKU, 2AVA, 2CGQ, 2GDW, 2KOO, 2KWL and 2L0Q) (X |
| 2 | 4f82 | - | http://scholar.google.com/https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5022050/ | The Crystal Structure of Peroxiredoxin Asp f3 Provides Mechanistic Insight into Oxidative Stress Resistance and Virulence of Aspergillus fumigatus | 2016 | F Hillmann, K Bagramyan, M Straburger - Scientific , 2016 - ncbi.nlm.nih.gov | ... Asp f3's enzymatic activity on peroxides and structural similarity to the previously characterizedyeast-orthologue ... After failing to find a solution using the entire 4F82 model, flexible loops were ...PDB structure identifiers are 5J9B for WT Asp f3 and 5J9C for the C31S/C61S mutant. ... |
| 3 | 4l82 | - | http://www.sciencedirect.com/science/article/pii/S1570963917302121 | N-terminus determines activity and specificity of styrene monooxygenase reductases | 2017 | T Heine, A Scholtissek, AH Westphal- et Biophysica Acta (BBA, 2017 - Elsevier | ... Here, PheA2 ( PDB ID: 1RZ1), HpaC (2D36), CobR (4IRA) and a putative oxidoreductase from Rickettsia felis ( 4L82 ) served as the structural templates [5,4547] and an iterative approach was used with Modeller Software 9.14 [48] to compute a RoStyBart model- structure . 2.4. ... |
| 4 | 3mqd | - | https://ir.library.oregonstate.edu/downloads/4t64gt04f | Exploring Protein Structure: Seeing the Forest and the Trees. | 2017 | AE Brereton - 2017 - ir.library.oregonstate.edu | Experimental Methods to Obtain Structures Only a few experimental methods exist that can yield enough information to accurately determine the 3-dimensional structure of a folded protein complete structural information often comes from using a combination of the methods |
| 5 | 4oj7 | - | https://www.nature.com/articles/s41598-017-16325-1 | Identification and analysis of seven effector protein families with different adaptive and evolutionary histories in plant-associated members of the | 2017 | R de AB Assis, LC Polloni, JSL Patan, S Thakur- Scientific reports, 2017 - nature.com | Based on this functional analogy, we performed a detailed in silico analysis of the CM-sec three-dimensional (3D) structure. The hit in the structural analysis was from Burkholderia thailandensis (PDB 4oj7.1.A) with 98.2% coverage and 39.74% identity, confirming the typical CM domain fold |
| 6 | 5dvw | - | http://journal.umpalangkaraya.ac.id/index.php/bjop/article/view/836 | Computational Drug Design against Ebola Virus Targeting Viral Matrix Protein VP30 | 2019 | A Venkatesan, L Ravichandran- Borneo Journal of, 2019 - journal.umpalangkaraya.ac.id | Protein structure preparation The protein crystal structure of Ebola VP30 protein ( PDB code: 5DVW ) with the resolution of 1.75 was retrieved from RCSB Protein Data Bank ( PDB ), a repository providing crystal structures of biotic macromolecules (Berman et al., 2000) |
| 7 | 4v6h | - | http://scripts.iucr.org/cgi-bin/paper?dp5099 | X-ray crystal structure of a malonate-semialdehyde dehydrogenase from Pseudomonas sp. strain AAC | 2017 | M Wilding, C Scott, TS Peat, J Newman - Section F: Structural , 2017 - scripts.iucr.org | ... After solving the structure, the difficulties associated with the molecular replacement from thehighly homologous sequence models became clearer, as despite their homology the structuresvary significantly. ... Similarly, PDB entry 4v6h (Seattle Structural Genomics Center ... |
| 8 | 3ue9 | - | http://scholar.google.com/https://espace.library.uq.edu.au/view/UQ:409815/s41770... | Disruption of de novo ATP biosynthesis abolishes virulence in Cryptococcus neoformans | 2016 | R Blundell - 2016 - espace.library.uq.edu.au | ... pioneered the concept of rational drug design (28) which involves the use of metabolic, genetica nd structural studies to identify potential targets, followed by the directed search ... AdSS has been purified and characterized from several sources ... Crystal structures are also available for the proteins from Homo sapiens (54%, PDB ID: 2V40); Mus musculus (54%, (50, 99)) ... and Burkholderia thailandensis (40%, PDB ID: 3UE9);. ... |
| 9 | 3oc6 | - | https://scholarworks.iupui.edu/handle/1805/7949 | Computational protein design: assessment and applications | 2015 | Z Li - 2015 - scholarworks.iupui.edu | ... 53 xiii Page 14. Figure 3.8 Superposition of the target structures ( PDB ID 3PTE and 1B1U, cyan) ... These interactions are utilized in protein structure prediction and protein design. ... structural topology and function through evolution. Experimental techniques, such as ... |
| 10 | 4qhq | - | https://thesis.library.caltech.edu/10840/ | Structural and Functional Characterization of the Escherichia coli MetNI Methionine Transporter | 2018 | PT Nguyen - 2018 - thesis.library.caltech.edu | PTN participated in soaking experiments for the L-semethionine-bound MetNI structure ( PDB :3TUZ) and manuscript preparation. Page 12. xii transporter architecture and mechanism. Science 16. Oldham ML, Khare D, Quiocho FA, Davidson AL, Chen J. Crystal structure of a |