We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 7TY0 | 2022 | 0 |
| 7TXZ | 2022 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 3gaf | - | https://www.sciencedirect.com/science/article/abs/pii/S2468823123005060 | Design of St-2-2 7α-HSDH mutants for altering substrate preference and thermostability | 2023 | Y Pan, S Tang, L Zhu, D Lou, J Tan, B Wang- Available at SSRN 4429366 - papers.ssrn.com | -helix structure , whereas the 226 C-terminus of EC 7-HSDH and the adjacent loop structure structure analysis stimulated our interest in studying the effect of the C-terminus 229 ... Structural alignments of St-2- 246 2 (slate blue) and crystallized 7α-HSDHs from Escherichia coli (7eny, gray) [41], 247 Clostridium absonum (5epo, salmon red) [22], Brucella Melitensis (3gaf, yellow) [42], |
| 2 | 3py6 | - | http://www.springerlink.com/index/W2W04L2272052KUW.pdf | Cation-PI Interactions in beta-Lactamases: The Role in Structural Stability | 2012 | P Lavanya, S Ramaiah, A Anbarasu - Cell biochemistry and biophysics, 2012 - Springer | ... 3PY6-A K37?Y263 -5.33 -1.41 -6.74 K231?W228 -8.02 -1.66 -9.68 2G2W-A R266?F66 -1.62 -1.06 -2.71 R259?W290 -7.01 -4.74 -11.75 K34?W60 -2.81 -0.75 -3.56 Cell Biochem Biophys 123 Page 3. Table 1 continued PDB ID Cation?p interacting residues ... |
| 3 | 3oxk | 3o0m, 3lb5, 3p0t, 3r6f | http://search.proquest.com/openview/a6bee6255f2ecb6acc21ab8e2dbd25bd/1?pq-origsi... | Structural Biology for Drug Design: Applications in Two Systems | 2016 | KM Maize - 2016 - search.proquest.com | ... Structurally, the purple HIT-like clade (4EGU, 3OXK) appears to be highly related to the known Hint proteins, whereas the remaining three HIT-like clades differ from the Hints by the addition of a long 12-15 residue C- terminal helix ... Sequence alignment alone fails to properly separate these two structural subclasses: those that draw the C-terminal helix from the same monomer (2EO4, 3LB5, 3P0T, 3O0M, 3NRD, 3OHE, 3I4S, and 3I24), and those that cross over to ... |
| 4 | 3nwo | - | https://arts.units.it/handle/11368/2938808 | Integration of bioinformatics analysis and experimental biocatalysis for a comprehensive approach to the synthesis of renewable polyesters | 2019 | M CESPUGLI - 2019 - arts.units.it | the structural features of a dataset of serine hydrolases, where cutinases play a central role enzyme structure , and the catalytic triad is represented by Ser105, Asp187 and His224. The This molecular architecture is responsible for the reduction of molecular oxygen by the |
| 5 | 3vab | - | https://www.biorxiv.org/content/10.1101/2020.10.01.322594v1.full-text | The Phaeodactylum tricornutum Diaminopimelate Decarboxylase was Acquired via Horizontal Gene Transfer from Bacteria and Displays Substrate | 2020 | VA Bielinski, JK Brunson, A Ghosh, MA Moosburner- bioRxiv, 2020 - biorxiv.org | in the active site. The structure underscores features unique to the PtLYSA clan of DAPDC and provides structural insight into the determinants responsible for the substrate-promiscuity observed in PtLYSA. ... Akin to protomer 2 of PtLYSA, this segment is not included in the structures of DAPDC from Aquifex aeolicus (PDB 2P3E) and Brucella melitensis (PDB 3VAB). |
| 6 | 3qhd | 3k14, 3q8h | http://search.proquest.com/openview/bed8a205da9b955be3ea1b46f7b199e9/1?pq-origsi... | Design and synthesis of IspD, IspE and IspF enzyme inhibitors of the methylerythritol phosphate pathway | 2016 | GM Goshu - 2016 - search.proquest.com | a fragment hit co-crystallized with Burkholderia pseudomallei (Bp) IspF ( PDB code: 3QHD ).2 Meroterpenoids contain non-isoprenoid structure Thiamine diphosphate (TDP) and Mg2+ bound to active site of E. coli DXS ( PDB code: 2O1S).68 Color: (magnesium) magenta |
| 7 | 3o0m | - | https://edoc.ub.uni-muenchen.de/21623/ | Evolutionary coupling methods in de novo protein structure prediction | 2016 | S Seemayer - 2016 - edoc.ub.uni-muenchen.de | On homomeric proteins, intermolecular couplings (red) have to be disentangled from intramolecular couplings (yellow) for de novo structure prediction to succeed (representative contacts mapped on PDB code 3O0M) |
| 8 | 3i3r | 3nrr | https://repositorio.ufrn.br/jspui/handle/123456789/22864 | Caracterizao estrutural e avaliao da atividade biolgica de uma nova hipotensina identificada no veneno do escorpio Tityus stigmurus | 2016 | RJA Machado - 2016 - repositorio.ufrn.br | ... This study aimed to carry out the structural characterization and biological evaluation of a new hypotensin identified in T. stigmurus scorpion venom. The cluster TSTI0006C, obtained from the venom gland transcriptome, was analyzed and had its primary structure reduced after ... |
| 9 | 2kn9 | - | https://www.biorxiv.org/content/10.1101/2020.10.27.356691v1.abstract | A new twist of rubredoxin function in M. tuberculosis | 2020 | T Sushko, A Kavaleuski, I Grabovec, A Kavaleuskaya- bioRxiv, 2020 - biorxiv.org | 21]. Previously, a zinc-substituted RubB structure was solved by NMR ( PDB ID: 2KN9 ). Pairwise . In the NMR model, residues at C and N termini show backbone variability, while the rest of the structure remain almost unperturbed |
| 10 | 6ar7 | - | https://www.mlsb.io/papers/MLSB2020_Learning_Super-Resolution_Electron_Density.p... | Learning Super-Resolution Electron Density Map of Proteins using 3D U-Net | 2020 | B Mullick, Y Wang, P Yadav, AB Farimani - mlsb.io | The mesh grid displays the electron density surface for the structure and the underlying line diagram represents the protein structure from the PDB file. (a) The electron density map of PDB ID: 6AR7 (Green), with resolution of 2.10 |