We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 7TY0 | 2022 | 0 |
| 7TXZ | 2022 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 6c9e | - | https://escholarship.org/uc/item/5rh0j6b2 | Molecular and shell biologyexamining the biochemistry and physiology of prokaryotic nanocompartments | 2020 | RJ Nichols - 2020 - escholarship.org | (B) Size comparison of the nanocompartments to GFP [ PDB : 1C4F], the HK97 viral capsid [ PDB : 1OHG], and the Lastly, given that there is no known structure of a DyP- packaging encapsulin, these nanocompartments may have a pore architecture that permits transit |
| 2 | 3o2e | - | https://portlandpress.com/bioscirep/article-abstract/doi/10.1042/BSR20202956/226... | Sinorhizobium meliloti YrbA binds divalent metal cations using two conserved histidines | 2020 | T Roret, G Alloing, JM Girardet, T Perrot- Bioscience, 2020 - portlandpress.com | protein structures found in the protein databank, we tentatively attributed the changes to the Interestingly, a structure of a BolA_H from the pathogen Coxiella burnetii ligating a Co atom was solved in the frame of a structural genomic initiative for drug design, deposited in ...The coordinates of A. thaliana, B. bovis, and C. burnetii BolA proteins are from previous crystal structures (PDB entries 4PUG, 4PUH, 4PUI, 3O2E and 3TR3) |
| 3 | 4l82 | - | https://d-nb.info/1169915167/34 | Identification of Biological Sulfonamide Degradation | 2018 | B Ricken - 2018 - d-nb.info | 99 4.3. Identification of enzymes responsible for SMX degradation .....103 4.4. Sulfonamides molecule structure influences biodegradability .....105 pdb|4L82| Putative Oxidoreductase Rickettsia felis |
| 4 | 5ts2 | - | http://pubs.acs.org/doi/abs/10.1021/acs.jpcb.7b09543 | Umbrella Sampling and X-ray Crystallographic Analysis Unveil an Arg-Asp Gate Facilitating Inhibitor Binding Inside Phosphopantetheine Adenylyltransferase | 2018 | A Mondal, R Chatterjee, S Datta- The Journal of Physical, 2018 - ACS Publications | In this study, we have attempted to further comprehend the structural details and mechanisms involved in AcCoA binding Material and method: MD simulations The PPATWT-AcCoA structure used for this study was obtained from RCSB- PDB ( PDB ID: 3X1J) |
| 5 | 3cez | - | http://ntnu.diva-portal.org/smash/record.jsf?pid=diva2:603697 | Structure-functional Characterization of Mammalian Redox Proteins: Methionine sulfoxide reductase B1 (MsrB1), Glutaredoxin domain (Grx) of TGR, and Thioredoxin (Trx) | 2013 | O Dobrovolska - 2013 - ntnu.diva-portal.org | ... situated in the second ?-sheet. The four cysteines Cys23, Cys26, Cys71, and Cys74, situated outside the protein active site, coordinate zinc ion, stabilizing the structure of MsrB1. Figure II.1.2. Structure of MsrB1 (pdb code 2kv1) [55]. II.1.1 MsrB1-Thioredoxin interaction ... |
| 6 | 3ujh | - | http://dx.plos.org/10.1371/journal.pone.0125831 | Evidence for Positive Selection within the PgiC1 Locus in the Grass Festuca ovina | 2015 | Y Li, B Canbäck, T Johansson, A Tunlid, HC Prentice - 2015 - dx.plos.org | ... 0.45 Å root-mean-square deviations for the backbone atoms from the template Toxoplasma 3ujh.pdb structure. ... of the candidate sites in the homology-modeled PGIC1 3-D structure, it can ...For comparative purposes, the 3-D protein structural locations of the PGI amino acid sites ... |
| 7 | 4weo | - | http://onlinelibrary.wiley.com/doi/10.1002/1873-3468.12834/full | Rational design of Meso2, 3butanediol dehydrogenase by molecular dynamics simulation and experimental evaluations | 2017 | Z Pu, F Ji, J Wang, Y Zhang, W Sun, Y Bao- Febs Letters, 2017 - Wiley Online Library | Sequence and structure alignment of the four BDHs. (A) Structure superposition of the BDHs in Protein Data Bank ( PDB code 1GEG: cyan; 3A28: green; 3WYE: yellow; 4WEO : red). (B) Sequence alignment between the four BDHs |
| 8 | 3r2v | - | http://onlinelibrary.wiley.com/doi/10.1002/pro.2361/abstract | Structural templates for modeling homodimers | 2013 | PJ Kundrotas, IA Vakser, J Janin - Protein Science, 2013 - Wiley Online Library | ... (3sb9). 37 The other four exceptions (3r2v, 3ra5, 3qlm, 4dz2) are likely to be monomers ... Science 338:1042- 1046. 4. Berman H, Henrick K, Nakamura H, Markley JL (2007) The worldwide ProteinData Bank (wwPDB): ensuring a single, uniform archive of PDB data. ... |
| 9 | 3men | - | https://www.degruyter.com/view/j/psr.2019.4.issue-10/psr-2019-0066/psr-2019-0066... | Combined approach of homology modeling, molecular dynamics, and docking: computer-aided drug discovery | 2019 | V Chahal, S Nirwan, R Kakkar- Physical Sciences Reviews, 2019 - degruyter.com | Figure 2: Steps involved in homology modeling for 3D structure prediction sequences of proteins with known 3D structures available in various depositories such as PDB , using the In some cases, a single template is not enough to provide the complete structural information ... This catalytic domain was modeled using the I-TASSER server [98] by exploiting the solved crystal structures of some HDAC proteins having structural identities (2VCG (37%), 1ZZ0 (37%), 1C3P (29%), 3MEN (36%), 3COY (47%), |
| 10 | 5unb | - | https://pdfs.semanticscholar.org/9d45/bcaa3c016845d28a2001ff2f58c6ca8ea726.pdf | Supplementary materials to PconsC4: fast, free, easy, and accurate contact predictions. | 2018 | M Michel, D Menndez-Hurtado, A Elofsson - 2018 - pdfs.semanticscholar.org | PconsC4 is trained on a set of 2759 proteins culled from PDB using PISCES (Wang and in (Michel et al., 2017) and the 46 proteins from CASP12 with available structures , Table S6 It is pre-trained to predict secondary structure and surface accessibility for each residue (golden |