We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 9YL5 | 2025 | 0 |
| 7K5Z | 2020 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 4ffc | - | http://books.google.com/books?hl=en&lr=&id=Z5LwCgAAQBAJ&oi=fnd&pg=PP1&dq=%224FFC... | Polyamines in Fungi: Their Distribution, Metabolism, and Role in Cell Differentiation and Morphogenesis | 2015 | L Valds-Santiago, J Ruiz-Herrera - 2015 - books.google.com | ... of Polyamines.....5 2.1 Introduction.....5 2.2 Chemical Structure and Physicochemical ... of theInteractions of Polyamines with Cell Macromolecules and Structures..... ... |
| 2 | 4jnq | - | http://www.mdpi.com/2218-0532/85/1/5 | Natural Products as New Treatment Options for Trichomoniasis: A Molecular Docking Investigation | 2017 | MS Setzer, KG Byler, IV Ogungbe, WN Setzer - Scientia Pharmaceutica, 2017 - mdpi.com | ... Page 8. Sci. Pharm. 2017, 85, 5 8 Figure 4. Overlay of the protein structures of Brucella melitensisTxR, PDB 4JNQ [24] (red ribbon), and the homology model of Trichomonas vaginalis TxR (blueribbon). The co-crystallized ligand is shown as a wireframe structure. ... |
| 3 | 4ed9 | - | http://onlinelibrary.wiley.com/doi/10.1111/febs.13100/pdf | Identifying functionally important cispeptide containing segments in proteins and their utility in molecular function annotation | 2014 | S Das, S Ramakumar, D Pal - FEBS Journal, 2014 - Wiley Online Library | ... dots. (G), (H) and (I) depict the presence of a functionally important fragment from 1bxrA (carbamoyl phosphate synthetase) in 4ed9A (CAIB/BAIF family protein), an unknown function protein. ... |
| 4 | 3l56 | - | http://www.sciencedirect.com/science/article/pii/S0042682217301861 | Evolutionary conservation of influenza A PB2 sequences reveals potential target sites for small molecule inhibitors | 2017 | H Patel, A Kukol - Virology, 2017 - Elsevier | ... 2.2. Protein structure modelling. The PB2 sequence of a human H5N1 isolate, for which an N-terminal structural fragment ( PDB ID: 3L56 ) exists, was used to construct a full length structural model using the I-TASSER modelling server (Yang and Zhang, 2015; Zhang, 2008). ... |
| 5 | 4lc3 | - | http://link.springer.com/article/10.1007/s00044-017-1822-0 | Structural and functional characterization of a unique hypothetical protein (WP_003901628. 1) of Mycobacterium tuberculosis: a computational approach | 2017 | R Uddin, S Rafi- Medicinal Chemistry Research, 2017 - Springer | ... 2011). Table 8 RMSD of top Z-ranked ProBis ligands after docking with modeled structure . S.No. PDB ID. 1 st ranked RMSD (). Lowest RMSD (). 1. 1O69. 4.93. 3.45. 2. 1MDO. 3.02. 2.89. 3. 2C81. 6.43. 3.9. 4. ... 8. 3UWC. 3.37. 3.36. 9. 4K2M. 9.68. 2.5. 10. 4LC3 . 8.24. 3.91. 11. 1B9H ... |
| 6 | 4efz | - | http://www.jbc.org/content/early/2015/06/16/jbc.M115.652537.short | Characterizations of Two Bacterial Persulfide Dioxygenases of the Metallo-β-lactamase Superfamily | 2015 | SA Sattler, X Wang, KM Lewis, PJ DeHan… - Journal of Biological …, 2015 - ASBMB | ... The statistics for the diffraction data are listed in Table 1. Initial phasing of apo- form PpPDO2diffraction data was conducted by molecular replacement with the PDB coordinates of model4EFZ using PHENIX Phaser (18). ... RESULTS Global Structure ... |
| 7 | 5cc8 | - | https://etd.auburn.edu/handle/10415/6361 | Transition from classical methods to new strategies: Mechanistic evaluation of inhibitors against Mycobacterium tuberculosis shikimate kinase | 2018 | N Ren Fuanta - 2018 - etd.auburn.edu | of each family. As stated previously, structural information and interactions with substrate(s) or Group Family and members Example Structure Group 1: Protein S/TY kinase/ atypical protein kinase/ lipid kinase/ ATP- grasp Thiamine-monophosphate kinase PDB : 5CC8 (50) |
| 8 | 4dlp | - | http://search.proquest.com/openview/1fe55be956c7d5c7e0786931e1ab956c/1?pq-origsi... | Functional effect of alterations to E. coli methionyl-trna synthetase -linker length | 2015 | Y Xia - 2015 - search.proquest.com | ... Table 2. Crystal structure of MetRS with different ligands. Organism Ligand PDB id Reference E. coli No ligand 1QQT 2. E. coli Methionine 1F4L 40. E. coli Methionine phosphonate 1P7P 41. ... A. aeolicus tRNAMet 2CSX 11. B. melitensis Selenomethionine 4DLP 42. ... |
| 9 | 3q8n | - | http://search.ebscohost.com/login.aspx?direct=true&profile=ehost&scope=site&auth... | MODELING AND DOCKING STUDIES OF 4-AMINOBUTYRATE AMINOTRANSFERASE FOR HUNTINGTON'S DISEASE. | 2011 | H Pareek, P Thakur, D Ray - International Journal of Pharma & Bio Sciences, 2011 - search.ebscohost.com | ... desired protein ie GABA-AT using a template sequence with PDB code 3Q8N. The constructed 3D models were checked for DOPE score and Ramachandran plot respectively with Modeller 9v8 and PROCHECK. Results are shown in Table 1. Model No. ... |
| 10 | 3tcq | - | http://link.springer.com/article/10.1186/s13029-015-0039-1 | CombAlign: a code for generating a one-to-many sequence alignment from a set of pairwise structure-based sequence alignments | 2015 | CLE Zhou - Source Code for Biology and Medicine, 2015 - Springer | ... there exist crystal structures for several of the filovirus VP40 proteins [ 21 ] (Sudan: 3TCQ, 4LD8;Zaire: 4LDB, 4LDD, 4LDM; Ebola sp.: 1ES6, 1H2C, 1H2D), structure models for ... models for proteinsthat are represented in the Protein Data Bank database (PDB) will naturally ... |