We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 5vbf | - | https://www.biorxiv.org/content/10.1101/2021.07.15.452591.abstract | The tetrameric assembly of 2-aminomuconic acid dehydrogenase is a functional requirement of cofactor NAD+ binding | 2021 | Q Shi, Y Chen, X Li, H Dong, C Chen, Z Zhong, C Yang- bioRxiv, 2021 - biorxiv.org | 144 The overall structure of AmnC protomers shares the general architecture of the ALDH 145 family (SSADH) ( PDB code:2W8P)(23-26). Pairwise superposition of the six protomers yielded 164 In this study, we elucidated the structure of AmnC and how it 260 |
| 2 | 6wps | - | https://academic.oup.com/glycob/advance-article-abstract/doi/10.1093/glycob/cwab... | Modernized uniform representation of carbohydrate molecules in the Protein Data Bank | 2021 | C Shao, Z Feng, JD Westbrook, E Peisach- , 2021 - academic.oup.com | glycan structures (eg, SARS-CoV-2 protein-carbohydrate complex PDB ID 6WPS ) and the partnership is committed to maintaining consistency and accuracy across the PDB archive by regularly reviewing data processing procedures and carrying out structure remediation efforts |
| 3 | 3ngj | - | http://www.springerlink.com/index/M06H55885X675605.pdf | Characterization and application of a newly synthesized 2-deoxyribose-5-phosphate aldolase | 2013 | ZY You, ZQ Liu, YG Zheng, YC Shen - Journal of industrial microbiology & Biotechnology, 2013 - Springer | ... The crystal structures of DERAs from Entamoeba histolytica (PDB accession NO. 3NGJ) and Thermotoga maritima (PDB accession NO. 3R12) were used as templates. ... 3NGJ, resolution 1.70 A?) and Thermotoga maritima (54.3 % identity; PDB accession no. ... |
| 4 | 3k2h | - | http://www.theses.fr/2015STRAF059 | Characterization of natural product biological imprints for computer-aided drug design applications | 2015 | N Sturm - 2015 - theses.fr | ... Changes in sequence and structure also explain the poor similarity between SB4 inhibitor-binding sites in Mitogen-activated protein (MAP) kinase 14 and MAP kinase 1 (PDB codes: 1bl7, 3erk), and between the antifolate LYA-binding site in human and protozoan thymidylate synthases (PDB codes: 1juj, 3k2h). ... |
| 5 | 3h81 | - | https://link.springer.com/content/pdf/10.1007/s12275-020-0089-1.pdf | Structural and sequence comparisons of bacterial enoyl-CoA isomerase and enoyl-CoA hydratase | 2020 | J Hwang, CS Jeong, CW Lee, SC Shin, HW Kim- Journal of, 2020 - Springer | (D) The electrostatic surface potential of the trimeric HyECH structure also shows that the periphery of the putative ligand-binding site has a positive charge MtECH, ECH from M. tuberculosis ( PDB code 3H81 ). Page 7. Crystal structures of BoECI and HyECH 7 |
| 6 | 3u03 | - | http://link.springer.com/article/10.1007/s00894-015-2897-5 | Iron depletion strategy for targeted cancer therapy: utilizing the dual roles of neutrophil gelatinase-associated lipocalin protein | 2016 | HC Tang, PC Chang, YC Chen - Journal of molecular modeling, 2016 - Springer | ... and 3D crystal conformation of human NGAL protein was acquired from Protein Data Bank (PDBID: 3U03). The ligand inside 3U03 was removed. ... We illustrated root mean square fluctuation(RMSF), database of secondary structure assignment and component (DSSP), smallest ... |
| 7 | 4k73 | - | http://www.theses.fr/2014PA066415 | Stratégies d'optimisation des bêta-lactamines pour le traitement des infections dues aux mycobactéries multirésistantes | 2014 | V Dubée - 2014 - theses.fr | ... 20 Tableau 3. Structures de L,D-transpeptidases inscrites dans la Protein Data Bank. ... Figure 1.Structure des classes les plus fréquemment utilisées de β-lactamines. ... accepteur. La pénicillineest un analogue structural de cette extrémité D-Ala–D-Ala, et pourrait donc former un ... |
| 8 | 3kre | - | http://www.freepatentsonline.com/y2019/0209499.html | COMPOUNDS WEAKENING SAICAR SYNTHETASE ACTIVITY AND APPLICATIONS | 2019 | W Pan, W Zhu- US Patent App. 16/334,256, 2019 - freepatentsonline.com | 3R9R), Thermotoga maritime (1KUT), Clostridium perfringens (3NUA), Ehrlichiachaffeensis ( 3KRE ), Geobacilluskaustophilus (2YWV basis of the above results, the crystal structure conformations in Saccharormyces cerevisiae ( PDB : 2CNQ) and Escherichia coli ( PDB : 2GQS) |
| 9 | 3f9i | - | http://www.rcsb.org/pdb/general_information/news_publications/newsletters/2014q2... | Education Corner | 2014 | J Beckham - Newsletter, 2014 - rcsb.org | ... that organism that is essential for survival or virulence (eg fatty acid biosynthesis enzymes 3F9I, dihydrofolate reductases 3DAT, or host-pathogen signaling phosphatases 2Y2F). The students narrow their selection by those enzyme which have an available PDB crystal structure ... |
| 10 | 5t8s | - | https://bmcpharmacoltoxicol.biomedcentral.com/articles/10.1186/s40360-020-00402-... | Prospects of Indole derivatives as methyl transfer inhibitors: antimicrobial resistance managers | 2020 | S Tha, S Shakya, R Malla- BMC, 2020 - bmcpharmacoltoxicol.biomedcentral | An integration of structure -based virtual screening and ligand-based virtual screening was employed to explore the antimicrobial properties of indole The X-ray diffraction structures of S-adenosyl methionine synthase, MetK from N. gonorrhoeae ( PDB id: 5T8S ) [13]; cobA from |