We are actively tracking the number of publications by the scientific community which reference our structures, whether in the main text, figure captions or supplementary material. Selected articles are manually reviewed. Publications by SSGCID authors are excluded from the manually reviewed list. From our manual curation results, we estimate that the false positive rate might be as high as 50% for some structures.
This list was obtained from Google Scholar searches using an API provided by Christian Kreibich.
| Structure | Year released | #citations |
|---|---|---|
| 7TY0 | 2022 | 0 |
| 7TXZ | 2022 | 0 |
| # | PDB | Additional SSGCID structures cited | Link | Title | Year | Citation | Highlighted abstract |
|---|---|---|---|---|---|---|---|
| 1 | 2khp | - | http://rave.ohiolink.edu/etdc/view?acc_num=akron1524681449524557 | NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY IN THE STUDY OF PROTEIN-LIGAND INTERACTIONS | 2018 | DL Morris - 2018 - rave.ohiolink.edu | Structures of target proteins were obtained from the Protein Data Bank (PDB). The PBD code for BrmGRX is 2KHP and hGRX1 is 1JHB. |
| 2 | 3eoo | - | http://is.muni.cz/th/256262/fi_m/thesis.pdf | Computational Methods for Detecting Ligand Accessible Pathways | 2012 | L Pravda - 2012 - is.muni.cz | ... Regarding the development of computers and the rapid growth of data in worldwide databases such as the Protein Data Bank [1], there have been demands on partial substitution of chemical experiment by computational models. ... |
| 3 | 4f82 | - | http://s-space.snu.ac.kr/handle/10371/125952 | Crystal Structures and Reaction Mechanism of 1-Cys Peroxiredoxin from Vibrio vulnificus | 2016 | - 2016 - s-space.snu.ac.kr | ... 2011) using a putative thioredoxin reductase from Burkholderia cenocepacia ( PDB code 4F82 ) as a search model. ... proteins. A. The dimeric unit of the VvPrx3 (C48D/C73S) structure at the reduced ... tuberculosis (green; PDB code 1XXU). ... |
| 4 | 3nwo | - | http://www.sciencedirect.com/science/article/pii/S0014579314001033 | The crystal structure of the amidohydrolase VinJ shows a unique hydrophobic tunnel for its interaction with polyketide substrates | 2014 | Y Shinohara, A Miyanaga, F Kudo, T Eguchi - FEBS letters, 2014 - Elsevier | ... method using the Molrep program [16], with the crystal structure of the putative proline iminopeptidase Mycobacterium smegmatis (PDB code: 3NWO) being used ... The resulting coordinates and structure factors have been deposited in the Protein Data Bank (PDB code: 3WMR) ... |
| 5 | 6q04 | - | https://www.biorxiv.org/content/10.1101/2021.02.09.430519v1.abstract | Transformations, Comparisons, and Analysis of Down to Up Protomer States of Variants of the SARS-CoV-2 Prefusion Spike Protein Including the UK Variant B. 1.1. 7 | 2021 | O Basidas, D Kokron, CE Henze- bioRxiv, 2021 - biorxiv.org | Clustal Omega uses a structure guided hidden Markov model (HMM) for multiple sequence alignment. Sequences were obtained directly from the PDB files across four different corona viruses SARS-CoV (6ACD) [14], SARS-CoV-2 (6VSB) [10], MERS-CoV ( 6Q04 ) [20], and |
| 6 | 3ecd | - | http://onlinelibrary.wiley.com/doi/10.1111/febs.13211/abstract | How pyridoxal 5'‐phosphate differentially regulates human cytosolic and mitochondrial serine hydroxymethyltransferase oligomeric state | 2015 | G Giardina, P Brunotti, A Fiascarelli, A Cicalini… - FEBS …, 2015 - Wiley Online Library | ... shows a completely open conformation of the dimer (PDB id: 3ecd), as in the case of apo-SHMT2 ...method using the apo-enzyme (PDB: 3ou5) as search model in MOLREP [54 ... F, Morea V,Angelaccio S, Saccoccia F, Contestabile R & Ilari A (2014) The crystal structure of archaeal ... |
| 7 | 5t8s | - | https://www.biorxiv.org/content/10.1101/622068v2.full.pdf | MCSS-based Predictions of Binding Mode and Selectivity of Nucleotide Ligands | 2020 | R Gonzalez-Aleman, N Chevrollier, M Simoes- bioRxiv, 2020 - biorxiv.org | method based on a coarse-grained model (RNA-LIM) was developed to model the structure of an on the protein-nucleotide complexes currently available in the Protein Data Bank (RCSB PDB (52 less than 2.0 and thus not representative of the currently available structural data |
| 8 | 4f4h | - | http://acervodigital.ufpr.br/handle/1884/43806 | Caracterizao de enzima nad sintetase (NADE2) de herbaspirillum seropedicae | 2016 | ARS Santos - 2016 - acervodigital.ufpr.br | ... Outras NAD sintetases de procariotos com domínio glutaminase como a de Cytophaga hutchinsonii (número PDB 3ILV) e Burkholderia thailandensis (número PDB 4F4H), possuem estruturas cristalinas determinadas e depositadas no banco de dados PDB. ... |
| 9 | 4iv5 | - | http://www.mdpi.com/1422-0067/16/8/18836/pdf | From Genome to Structure and Back Again: A Family Portrait of the Transcarbamylases | 2015 | D Shi, NM Allewell, M Tuchman - International Journal of Molecular …, 2015 - mdpi.com | ... dodecameric holoenzyme with DHOase, were determined [50,51]. Only one eukaryotic ATCasestructure, of Trypanosoma cruzi, has been determined (PDB code: 4IV5). ... Both domains havean αβα structure with a parallel β-sheet in the center and α helices on both sides. ... |
| 10 | 3p96 | - | http://pubs.acs.org/doi/abs/10.1021/acs.biochem.7b01082 | Regulatory Mechanism of Mycobacterium tuberculosis Phosphoserine Phosphatase SerB2 | 2017 | GA Grant- Biochemistry, 2017 - ACS Publications | figure Figure 1. Ribbon diagram of the structure of M. avium phosphoserine phosphatase (maPSP, Protein Data Bank entry 3p96 ) (right panel). The enzyme is a dimer with each subunit consisting of a catalytic domain (dark |